Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D21
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 281 7e-77
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 279 2e-76
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 279 2e-76
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 29 0.46
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces... 26 3.3
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 5.7
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 5.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.7
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 7.5
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 7.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 7.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 10.0
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 281 bits (688), Expect = 7e-77
Identities = 123/168 (73%), Positives = 143/168 (85%)
Frame = +2
Query: 53 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 232
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 233 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 412
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 413 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVHVDISTNK 556
YKLCKV+RV G K VP+LVTHDGRT+RYPDPLI VND++ +++ TNK
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNK 168
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 279 bits (685), Expect = 2e-76
Identities = 122/168 (72%), Positives = 143/168 (85%)
Frame = +2
Query: 53 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 232
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 233 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 412
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 413 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVHVDISTNK 556
YKLCKV+RV G K VP+LVTHDGRT+RYPDPLI VND++ +++ TNK
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNK 168
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 279 bits (684), Expect = 2e-76
Identities = 122/168 (72%), Positives = 143/168 (85%)
Frame = +2
Query: 53 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 232
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 233 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 412
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 413 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVHVDISTNK 556
YKLCKV+RV G K VP+LVTHDGRT+RYPDPLI VND++ +++ TNK
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNK 168
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.1 bits (62), Expect = 0.46
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 455 SVPYLVTHDGRTLRYPDPLINVNDSVHVDIST 550
+V +VT G TLR D +I +ND+VH+ + T
Sbjct: 140 NVKVMVTTGGTTLR--DDIIRLNDTVHIVVGT 169
>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 129 TPPSLSNIHALGAFKRFKCFFGPRAMLNKTLNKKETSNL 13
T +L IH+LG F C FGP + K L K +L
Sbjct: 246 TNRALKIIHSLGMFA---CIFGPLEIHTKKLQSKNIESL 281
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.4 bits (53), Expect = 5.7
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 465 YGTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGS 286
YGTLL L L + + + +LP ++ +F ++ T+ G + S
Sbjct: 578 YGTLLMHFEPTYALSRLVSFAPPEVTF--SLPELDFLTSVFNFPLALRNTATRILGIILS 635
Query: 285 VR--TFPSTLMRRCFTILSTS 229
+ T S ++ CFTI+STS
Sbjct: 636 TKDSTRISEVLSSCFTIISTS 656
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 447 PVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFS 328
P+ RRT L L+ + W F S + RN +FS
Sbjct: 423 PILKRRTPQELLLSGRDLTPWPQIRRFDSLLARNRGDIFS 462
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 314 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYL-VTHDGRT 490
+V S+EK N++F + Y+V + + + K+ ++ ++ K+VP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 491 LR 496
L+
Sbjct: 1778 LK 1779
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 182 LVIFLRNRLKYALTGNEVLKIV 247
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 7.5
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 122 GGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 301
G + A RP +G K+ V LRN A + IV R ++ + RT P+
Sbjct: 201 GNLNARRPQSGLLKIT-----VGSLRNVTHSAGISKQTEMIVAIRAEDLE-RARTRPSRT 254
Query: 302 AGFMDV--VSIEKTNELFRLIYDVK 370
F + + +EKTNE+ ++Y+ K
Sbjct: 255 DRFNETFEIDLEKTNEVEIVVYEKK 279
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 357 IKRNNSFVFSMDTTSINPAGYVGSV 283
+K+ ++ VF +INPA Y G+V
Sbjct: 40 LKKRDTNVFDSVVDTINPASYFGTV 64
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -3
Query: 210 LSRFRRKITSGKHSRSLWGPVEGRGAYTPPSLS 112
L R +R + + S+W +E A+ PSLS
Sbjct: 597 LLRLKRSNRTAAQTASVWNRIERAAAHDGPSLS 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,267
Number of Sequences: 5004
Number of extensions: 47439
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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