Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D21
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 259 1e-69
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 258 2e-69
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 257 4e-69
01_05_0710 + 24492337-24493053 30 1.1
01_01_1101 + 8731427-8732938 29 1.9
09_03_0031 + 11735431-11735728,11736704-11737041,11737150-117372... 29 2.5
01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759 29 3.3
10_08_0510 + 18430580-18431781,18433176-18433554 28 4.4
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 28 4.4
03_05_0145 + 21254448-21255488 28 4.4
03_02_0539 - 9329572-9330729,9330988-9331041 28 4.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.8
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 27 7.7
04_04_0950 + 29609484-29611025 27 7.7
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 27 7.7
03_05_0057 + 20350971-20351405 27 7.7
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 27 7.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 259 bits (634), Expect = 1e-69
Identities = 116/167 (69%), Positives = 136/167 (81%)
Frame = +2
Query: 56 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 235
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 236 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 415
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKF 137
Query: 416 KLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVHVDISTNK 556
KLCKVR V G K +P+L T+DGRT+RYPDPLI ND++ +D+ TNK
Sbjct: 138 KLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNK 184
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 258 bits (632), Expect = 2e-69
Identities = 114/168 (67%), Positives = 137/168 (81%)
Frame = +2
Query: 53 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 232
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 233 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 412
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 413 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVHVDISTNK 556
+KLCKVR V G K +PYL T+DGRT+RYPDPLI ND++ +D+ TNK
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNK 168
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 257 bits (630), Expect = 4e-69
Identities = 113/168 (67%), Positives = 137/168 (81%)
Frame = +2
Query: 53 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 232
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 233 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 412
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAK 120
Query: 413 YKLCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVHVDISTNK 556
+KLCKVR V G K +PYL T+DGRT+RYPDP+I ND++ +D+ TNK
Sbjct: 121 FKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNK 168
>01_05_0710 + 24492337-24493053
Length = 238
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 552 LVEMSTCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLYLASSGVIRWI 382
L M T T +F L++ + +RPS + LLG + +RR ++ V+RW+
Sbjct: 93 LASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSRRRARE----AASVVRWL 145
>01_01_1101 + 8731427-8732938
Length = 503
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -2
Query: 238 KHLIAGERVLEPISQEDH*RQAFAQLVGTRRGPRRVHAAQLVQ--HP 104
+HL+ L P H R A A L+ + R P R HAA LV+ HP
Sbjct: 29 RHLLQAHAYLLPRGGHRHARVASALLLASLRLPLRDHAAALVRRVHP 75
>09_03_0031 +
11735431-11735728,11736704-11737041,11737150-11737285,
11737477-11737613,11737701-11737824,11738859-11739364
Length = 512
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 551 WWRCRRAPSRSH**AGPGTGACARRASPGTARSWGRSRRAAPCTAC 414
W CRR+ SRS +G G+G+ RR + G A T C
Sbjct: 25 WGWCRRSRSRSGSRSGSGSGSSRRRLPRKGSGGGGGGEDATVATGC 70
>01_06_1283 - 35977646-35978703,35980177-35980272,35980627-35980759
Length = 428
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 421 VQGAARRDRPQERAVPGDARRAHAPVPG 504
++GA RR R E+A+P + AP PG
Sbjct: 4 LRGAKRRKRQPEKALPAAGQAMPAPAPG 31
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 552 LVEMSTCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 412
L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 196 LCKNGRCTEARKIFDSMTKRGLKPD-ITTYGTLLQGYATKGALVEMH 241
>10_08_0509 +
18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 552 LVEMSTCTESFTLMSGSGYRSVRPSCVTRYGTLLGPVATRRTLHSLY 412
L + CTE+ + R ++P +T YGTLL AT+ L ++
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPE-ITTYGTLLQGYATKGALVEMH 359
>03_05_0145 + 21254448-21255488
Length = 346
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +1
Query: 424 QGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGARRHL 546
+G ARR P++R A A P PA R G HL
Sbjct: 117 KGRARRRTPEQRRPKEAAGNGRARSPSPASAQRRYGGGEHL 157
>03_02_0539 - 9329572-9330729,9330988-9331041
Length = 403
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 406 SQVQAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCER 525
S A AA++ RP A AR A AP P PA +C R
Sbjct: 58 SSASAAAAAAQQARPNSMAER--ARLARAPQPEPALKCPR 95
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 347 FRLIYDVKGRFTIHRITPEEAKYKLCKVRRVATGP 451
+ LIYD++G + + P++A L + V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 415 QAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLGARRHLHQ 552
QA + ++RD+ ++++ G + + P P + L A+ ++HQ
Sbjct: 512 QAAKDVSKRDKKKKKSSKGPSTKKAKPTPATSSAVPELLAQTNVHQ 557
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 252 CFTILSTSLPVSAYLSRFRRKITSGKHSRSLWGPVEGRGAYTP 124
CF + + V+ + R +RK + K + L GP +G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 433 ARRDRPQERAVPGDARRAHAPVPGPAHQCERLGAR 537
+RR P+E PG + H+P P + LG R
Sbjct: 57 SRRRVPKENVDPGSSPAGHSPFRSPTSSAKPLGNR 91
>03_05_0057 + 20350971-20351405
Length = 144
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +1
Query: 415 QAVQGAARRDRPQERAVPGDARRAHAPVPGPAHQCERLG 531
Q Q AAR D P R + AP PG A RLG
Sbjct: 29 QPPQAAARPDEAPHHRQPAPDRPSAAPEPGGAGGVARLG 67
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 368 KGRFTIHRITPEEAKYKLCKVRRVATGPKSVPYLVTHDGRTLRYP---DPLINVNDSVH 535
KG+ + + E + + V R ++ P S PY VT T RYP L+ N+ +H
Sbjct: 591 KGKAAMVQCESETERSQTVSVPRTSSVPPSPPYRVTGMYGTPRYPAEKSVLLKKNNVIH 649
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,837
Number of Sequences: 37544
Number of extensions: 356038
Number of successful extensions: 1241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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