Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D21
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   235   2e-62
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.56 
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.56 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    29   1.7  
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   2.3  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   6.9  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    27   6.9  
Z68119-1|CAA92191.1|  523|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    27   9.1  
U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family...    27   9.1  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    27   9.1  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   9.1  
AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  235 bits (574), Expect = 2e-62
 Identities = 108/166 (65%), Positives = 129/166 (77%)
 Frame = +2

Query: 59  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 238
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 239 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 418
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 419 LCKVRRVATGPKSVPYLVTHDGRTLRYPDPLINVNDSVHVDISTNK 556
           LCKV+ V T  K VP L T DGRT+RYPDP + VND++  +IST K
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQK 167


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 408 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 250
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 408 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 250
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 371 GRFTIHRITPEEAKYKLCKVRRVATGPKSVP-----YLVTHDGRTLR-YP 502
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 277 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 185
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 277 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 185
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 366 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 256
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 384 STVSHLK-KPSTSCARCGASRP 446
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 438 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 295
           T R    LYL       I +I+ L   S++K NNSF+F      I+   Y
Sbjct: 15  TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -3

Query: 378 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 199
           N     YI+ +    F +D+T  N  G + SV ++ +T      TI  +++ +++  S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215


>Z68119-1|CAA92191.1|  523|Caenorhabditis elegans Hypothetical
           protein T18D3.1 protein.
          Length = 523

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -3

Query: 462 GTLLGPVATRRTLHSLYLASSGVIRWIVNLPFTSYIKRNNSFVFSMD 322
           G +L    +RR  H  ++ S   +R+  N P TSY KR  S V SM+
Sbjct: 120 GGILDVRGSRRREHHHHVVSLYDLRY-PNDPITSYFKRLKSSVTSME 165


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 331 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 236
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>U41038-3|AAK29708.3|  623|Caenorhabditis elegans Cadherin family
           protein 9 protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 18  LTFLSCSKFCSTWRAGQR 71
           L  L C KFC  W+ G R
Sbjct: 537 LAILVCRKFCEKWKTGHR 554


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 331 LNGYNVHKSRRVRGVSPHFPVHFDETLLHNLK 236
           L   NVH  R   G+    PV FD T+  N+K
Sbjct: 465 LREVNVHSLREQIGIVSQEPVLFDGTIYENIK 496


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 546 EMSTCTESFTLMSGSGYRSVRPSCVT 469
           +++T +++FT M   G+RS   SCV+
Sbjct: 789 DLTTSSDNFTCMCAQGFRSEGRSCVS 814


>AF000197-5|AAB52900.3|  579|Caenorhabditis elegans Hypothetical
           protein T21G5.1 protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 353 NGITHLFSQWIQRP*IPPGTWGQSALSRPL 264
           N +  LF+Q IQ   +PPGT  QS+   P+
Sbjct: 516 NKLPLLFAQTIQATSLPPGTIAQSSTPIPI 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,820,042
Number of Sequences: 27780
Number of extensions: 275706
Number of successful extensions: 873
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)