Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D19
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   2.9  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   3.8  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   6.7  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   6.7  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    25   6.7  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    25   8.9  

>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 146 LKI*QLTFKDGGVLCVYNYLSTQTL 72
           LKI  +T + G V+ +YN +++QT+
Sbjct: 300 LKISNITLRSGSVVSLYNRINSQTV 324


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 242 SGHLVLFTLKPFLN*LNILFYKTLFRISF 156
           + H++LF LKPF+  L +L   T   +SF
Sbjct: 147 NSHMLLFYLKPFVIALPVLIGVTCILLSF 175


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 6   RGGRSHAPSNNIFESSKTIITYQRL 80
           R G+  AP+ NI+ESS    T  +L
Sbjct: 290 RAGKDSAPAFNIYESSTFAFTLAKL 314


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 318 PELMKVTVPMDEDRRISYL 374
           PEL+K+  PM+ED  +S L
Sbjct: 97  PELLKLPGPMEEDEVVSLL 115


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 478 TRVTPHFSWSCKSKTKVDTFP 416
           + + PH SWS KS+ K+   P
Sbjct: 122 SEIHPHMSWSSKSEGKMFKIP 142


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 345 MDEDRRI-SYLDQLKDYRPCLPDV 413
           M +D+ + ++L Q+ DY P +PDV
Sbjct: 87  MAKDKTLENFLAQMDDYSPLIPDV 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,489
Number of Sequences: 5004
Number of extensions: 44097
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)