Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D19
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0797 - 27789692-27789715,27790304-27790417,27791020-277911...    29   1.7  
07_03_0295 - 16345592-16345947,16346265-16346697                       28   3.9  
05_03_0411 - 13622241-13622591,13622838-13623476,13624031-136241...    28   5.1  
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788...    27   6.8  
04_03_1016 + 21742060-21742219,21742301-21742596,21742705-217427...    27   8.9  

>03_05_0797 -
           27789692-27789715,27790304-27790417,27791020-27791199,
           27791285-27791376,27791797-27791908,27791990-27792208,
           27792556-27792592,27793719-27793819,27793963-27794058,
           27794312-27794437,27794555-27794869
          Length = 471

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 364 IRLSSSIGTVTFISSGVHSIWTCDPLAIAAWIKHKHNSNLRAA 236
           +R +++  T+ F     +S+W  DP    AW+  KH+++LR+A
Sbjct: 42  LRDAATAATIAFDYQ--YSLWGLDP-GTPAWVSAKHDAHLRSA 81


>07_03_0295 - 16345592-16345947,16346265-16346697
          Length = 262

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 184 KRIFNQFKKGFKVNNTRWPL*DYCCVCV 267
           K++ +QF K F+    RW + D   VC+
Sbjct: 82  KKMLHQFNKNFRTPQARWVIQDEIAVCL 109


>05_03_0411 -
           13622241-13622591,13622838-13623476,13624031-13624177,
           13624364-13624486,13624609-13624784,13625168-13625444
          Length = 570

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 313 HSIWTCDPLAIAAWIKHKHNSNLRAAI 233
           H+I+  DP    AW+K+   S LRAA+
Sbjct: 291 HNIFWEDPKYTPAWVKNLTGSQLRAAV 317


>05_05_0357 +
           24377989-24378039,24378601-24378632,24378724-24378818,
           24379165-24379237,24379804-24379867,24380465-24380732,
           24381132-24381202,24382028-24382084,24382302-24382403,
           24382544-24382588,24383616-24383693,24384350-24384400,
           24384475-24384556,24384883-24384956,24386093-24386144,
           24386230-24386288,24386380-24386456,24386692-24386778,
           24387011-24387101
          Length = 502

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 261 LCFIQAAIAKGSQVQIECTPELMKVTVPMDEDRRISYLDQLK 386
           +CF+ + +  GS VQ+     L+ +   +D +R +  LDQ++
Sbjct: 103 ICFLNSMMDLGSDVQVRAAGGLLAI---LDNERLLDTLDQME 141


>04_03_1016 +
           21742060-21742219,21742301-21742596,21742705-21742758,
           21743480-21743503
          Length = 177

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 342 PMDEDRRISYLDQLKDYRPCLPDVDGKVSTFVLDLQD 452
           P DE+  I +L +     PC PD+   V T +L+L D
Sbjct: 15  PSDEELIIHFLRRKASLLPCQPDI---VPTLILNLYD 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,554,711
Number of Sequences: 37544
Number of extensions: 276838
Number of successful extensions: 493
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)