Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D19
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445933-4|CAI14538.1| 2406|Homo sapiens human immunodeficiency ...    30   5.5  
AL445933-3|CAI14537.1| 2405|Homo sapiens human immunodeficiency ...    30   5.5  
AF278765-1|AAK01082.1| 2406|Homo sapiens kappa B and V(D)J recom...    30   5.5  
AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.     30   5.5  
AY956765-1|AAX38252.1|  505|Homo sapiens heat shock protein 90Bd...    29   9.7  

>AL445933-4|CAI14538.1| 2406|Homo sapiens human immunodeficiency virus
            type I enhancer binding protein 3 protein.
          Length = 2406

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 462  ISHGPVSPRRKWTPSRQ 412
            +S+ PVSPRR W+PS++
Sbjct: 1958 LSYKPVSPRRPWSPSKE 1974


>AL445933-3|CAI14537.1| 2405|Homo sapiens human immunodeficiency virus
            type I enhancer binding protein 3 protein.
          Length = 2405

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 462  ISHGPVSPRRKWTPSRQ 412
            +S+ PVSPRR W+PS++
Sbjct: 1958 LSYKPVSPRRPWSPSKE 1974


>AF278765-1|AAK01082.1| 2406|Homo sapiens kappa B and V(D)J
            recombination signal sequences binding protein protein.
          Length = 2406

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 462  ISHGPVSPRRKWTPSRQ 412
            +S+ PVSPRR W+PS++
Sbjct: 1958 LSYKPVSPRRPWSPSKE 1974


>AB046775-1|BAB13381.2| 2414|Homo sapiens KIAA1555 protein protein.
          Length = 2414

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 462  ISHGPVSPRRKWTPSRQ 412
            +S+ PVSPRR W+PS++
Sbjct: 1967 LSYKPVSPRRPWSPSKE 1983


>AY956765-1|AAX38252.1|  505|Homo sapiens heat shock protein 90Bd
           protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 133 CQILRLCSKEIRNSVL*KRIFNQFKKGFKVNNTRWPL*DYC 255
           C I+  C +++ NS     +  ++KKGF+V     P+ +YC
Sbjct: 392 CDIIGECKEQVANSAF---VEQEWKKGFEVIYMSEPIDEYC 429


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,343,310
Number of Sequences: 237096
Number of extensions: 1480955
Number of successful extensions: 2391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2391
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)