Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D19
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   2.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   5.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   10.0 

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 9   GGRSHAPSNNIFESSKTIITYQRLC*QII 95
           GGR   PSN IF  S+     QR C  ++
Sbjct: 32  GGRGKCPSNEIF--SRCDGRCQRFCPNVV 58


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 9   GGRSHAPSNNIFESSKTIITYQRLC*QII 95
           GGR   PSN IF  S+     QR C  ++
Sbjct: 32  GGRGKCPSNEIF--SRCDGRCQRFCPNVV 58


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 270 IQAAIAKGSQVQIECTPELMKVTVPMDED 356
           +  A  KGS+  +  TPE+ K    M+ D
Sbjct: 274 LSPATPKGSKCSMITTPEIKKEVEDMEYD 302


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 224 FTLKPFLN*LNILFYKTLFRISFEHNLKI 138
           F++  FL  LN++F  +  + S  H L +
Sbjct: 476 FSIYSFLERLNLIFMSSSLQWSSTHTLDV 504


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 224 FTLKPFLN*LNILFYKTLFRISFEHNLKI 138
           F++  FL  LN++F  +  + S  H L +
Sbjct: 514 FSIYSFLERLNLIFMSSSLQWSSTHTLDV 542


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 311 LDLDLRSFGDRRLDKTQTQQ*SQSGHLVLFTLKPF 207
           L  D R+F    L  T+ ++    G  VLF + PF
Sbjct: 180 LTFDNRAFTQASLAMTREEKHLPIGASVLFEIFPF 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,055
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)