Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D18
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 33 0.013
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 0.49
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 27 0.86
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 1.1
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.5
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 6.1
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 24 8.0
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 24 8.0
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 24 8.0
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 24 8.0
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 33.5 bits (73), Expect = 0.013
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 242 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGTVCIL 409
++ G KNGG R VL ++ +YP + + K K VR T R +L PGTVCIL
Sbjct: 5 KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.49
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 120 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 230
SET S S K+G T+RR S R +KLK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 0.86
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = +2
Query: 272 RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 391
RT+L + K FYP GR H SK R+ R TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 1.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 VGILWLHHSPMWRRNPPQPQPAVSRSR 92
VG L L+ SP + QPQP SRSR
Sbjct: 266 VGSLRLYRSPSIPNDVEQPQPQSSRSR 292
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 78 VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK 245
++ S ++RG T E V + G T+ Y SLS+ ++K +N P SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 221 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 135
SW QLS SS+ +C SC RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 8.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 248 GGEKNGGTRTVLLKSRKSFYPTQDKIRGRSH 340
GGEKNG L S S+ T + RSH
Sbjct: 308 GGEKNGEAPLEALLSLLSYINTHQRQSERSH 338
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 319 VLSGVE*FPAFQQDCTSASILFTAYL 242
VLSG++ Q++CT ++L T+YL
Sbjct: 429 VLSGLQ--QLMQEECTDIAVLRTSYL 452
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 8.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 303 NDFLLFSRTVRVPPFFSPPICLT 235
ND L ++TV P FF+P +C T
Sbjct: 300 NDVEL-AKTVGTPAFFAPELCWT 321
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 8.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 196 LLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFANFL 89
LL LI+ +L + FG T Y +S +I+ + N L
Sbjct: 27 LLVLSLIFYILYI--CFGTTSYILSGIILGAYVNSL 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,231
Number of Sequences: 5004
Number of extensions: 33964
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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