Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D18
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 1.4
01_04_0134 - 16481035-16481150,16481678-16481746,16482184-164825... 29 1.9
03_06_0094 + 31610866-31611288 28 2.5
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 28 2.5
01_07_0229 + 42161770-42164562 28 2.5
10_08_0974 + 21969713-21971914 27 5.8
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 27 5.8
01_06_0936 - 33174598-33174803,33174897-33174987 27 5.8
12_01_0615 + 5072267-5073253 27 7.7
12_01_0317 + 2417147-2417587,2417622-2418134 27 7.7
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 27 7.7
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 7.7
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 36 SPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRL--YISLSVRRTRKL 209
+P R PP P PA +R+ K A + + P CT L Y++ V+R K
Sbjct: 595 APSKSRAPPTPPPAHTRATKKAK-----VDAAKNKDPGYDCTQEELDAYVASEVKRQFKP 649
Query: 210 KSPRNQ 227
+SP +
Sbjct: 650 RSPEKK 655
>01_04_0134 -
16481035-16481150,16481678-16481746,16482184-16482503,
16482566-16482588
Length = 175
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 43 CGGETRRSRSRRCQEAESW 99
CGG RRSR RC A W
Sbjct: 60 CGGGARRSRGERCGMATPW 78
>03_06_0094 + 31610866-31611288
Length = 140
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 66 PQPAVSRSRKLANRGIMTSE 125
P+PAV+R R++A+RG+ S+
Sbjct: 109 PKPAVARKRRVASRGVRASK 128
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +3
Query: 51 RNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYIS 182
R P+P VSRSR L I SE +V P C + R Y+S
Sbjct: 251 RATPKPINEVSRSRSLQEDYIRLSEP--TVRPTINCFSYRYYLS 292
>01_07_0229 + 42161770-42164562
Length = 930
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 123 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 215
+T + SPKA T R+ Y+S S+R T LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 274 YSPAEKQEIILPHSGQDQGSFSWQEFQ*TCA*DET 378
Y P+ K +++ G +QG+ SW EF T D+T
Sbjct: 364 YRPS-KSDVVGGEDGVEQGNTSWPEFVPTSGPDKT 397
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 27 LHHSPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSV 191
LH + R PP P P + RK + I V++ S GC Y++ V
Sbjct: 25 LHAAVAGARAPPPPPPPGNCQRKCGDVDIPYPFGVWNGSESDGCAVPGFYLNCDV 79
>01_06_0936 - 33174598-33174803,33174897-33174987
Length = 98
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 21 LWLHHSPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCT 161
L HH + + P PA++ ++ G+ SET +SVS AG T
Sbjct: 26 LTAHHGYVVVEDVKAPVPALTCNKV---HGVQASETCFSVSQSAGLT 69
>12_01_0615 + 5072267-5073253
Length = 328
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 7 GRLEYYGSTTAQCGGETRRSRSRRCQEAESWQ 102
G L G+ G E RRS RR + A W+
Sbjct: 154 GELGQRGAAAEAAGKERRRSARRRARPARQWR 185
>12_01_0317 + 2417147-2417587,2417622-2418134
Length = 317
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 6 RPVGILWLHHSPMWRRNPPQPQPAV 80
+PV ++W H +RR PP P AV
Sbjct: 258 QPVDVMWDLHGWWFRREPPAPGWAV 282
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 60 PQPQPAVSRSRKLANRGIMTSETVYSV 140
P P P +RSR+ N GI+ TV V
Sbjct: 252 PLPPPRSNRSRRAKNAGIVAGATVAGV 278
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 26.6 bits (56), Expect = 7.7
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 257 KNGGTRTVLLK----SRKSFYPTQD-KIRGRSHGKSFSKHVRRTRPNLTPGTVCIL 409
KNGGT K + FYP D K R S K+ +R T +TPGTV IL
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKANPTKLRST---ITPGTVLIL 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,487,186
Number of Sequences: 37544
Number of extensions: 250374
Number of successful extensions: 774
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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