Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D18
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 31 0.43
Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical pr... 29 1.3
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 3.0
Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 27 7.0
Z71264-3|CAA95827.1| 325|Caenorhabditis elegans Hypothetical pr... 27 7.0
AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical... 27 7.0
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 26 9.2
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 26 9.2
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 30.7 bits (66), Expect = 0.43
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 107 RNYDLGNGVLRFSKSRMYHKK 169
RN+DL GVLRFS SR+ KK
Sbjct: 12 RNFDLSPGVLRFSASRLRLKK 32
>Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical
protein F29F11.4 protein.
Length = 713
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 57 PPQPQPAVSRSRKLAN--RGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLK 212
P P P SR LA+ R ++ E Y P+ T RRL SLS + RK+K
Sbjct: 613 PGMPPPPPSRPLNLASPLRTLLEKEQKYDEDPEIQLTPRRLN-SLSDIQARKVK 665
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 16 EYYGSTTAQCGGETRRSRSRRCQEAESWQTEEL*P 120
E+ G + QCGG R R R C++ E+ + EE P
Sbjct: 636 EWQGECSQQCGGCGHRLRKRECKK-EACRKEEKRP 669
>Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical
protein AC3.8 protein.
Length = 531
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 223 FLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 95
FL +F F L + L Y+ LVV P FG + + AN
Sbjct: 4 FLLVFLFFALYCNVLAYNYLVVAPVFGYSHMKFMNKVADTLAN 46
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +2
Query: 275 TVLLKSRKSFYP-------TQDKIRGRSHGKSFSKHVRRTRPNLTPGTV 400
T K RKSF P TQ G++ GK+ K P L+P +
Sbjct: 480 TTTKKPRKSFSPGSATPKHTQPSENGKASGKTVGKEKESNSPELSPNVI 528
>Z71264-3|CAA95827.1| 325|Caenorhabditis elegans Hypothetical
protein K07G5.4 protein.
Length = 325
Score = 26.6 bits (56), Expect = 7.0
Identities = 9/45 (20%), Positives = 25/45 (55%)
Frame = +3
Query: 6 RPVGILWLHHSPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSV 140
+P ++ H +PP P+P+++R+ + R I+ + + +++
Sbjct: 211 KPTSTIYYHDISSSEASPPPPRPSITRTESVP-RSILKNSSSFAI 254
>AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical
protein Y73B6BL.19 protein.
Length = 609
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 28 STTAQCGGETRRSRSRRCQEAESWQTEEL*PRKRCTPFLQKQD 156
S TA G+T+R R C E+ + EEL R T F Q D
Sbjct: 511 SETASLKGKTKRKRRLCCVSKENEEMEELDRETRVT-FNQNMD 552
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 214 LFSFRVLLTDKLIYSLLVVHPAFGE 140
+F F+VL D+L+ S L++HPA E
Sbjct: 911 VFQFQVLRADRLLLS-LIMHPATDE 934
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 214 LFSFRVLLTDKLIYSLLVVHPAFGE 140
+F F+VL D+L+ S L++HPA E
Sbjct: 909 VFQFQVLRADRLLLS-LIMHPATDE 932
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 214 LFSFRVLLTDKLIYSLLVVHPAFGE 140
+F F+VL D+L+ S L++HPA E
Sbjct: 909 VFQFQVLRADRLLLS-LIMHPATDE 932
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,071,977
Number of Sequences: 27780
Number of extensions: 198408
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -