Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D16
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 151 7e-38
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 30 0.22
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 29 0.38
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 28 0.88
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 1.5
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 1.5
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 27 2.0
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 2.0
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 27 2.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 2.0
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 26 3.5
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 3.5
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 4.7
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.7
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 25 6.2
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 8.2
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 25 8.2
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 151 bits (366), Expect = 7e-38
Identities = 89/211 (42%), Positives = 127/211 (60%), Gaps = 24/211 (11%)
Frame = +1
Query: 19 PARVTLLELPNRTEIRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKNDIKYSGMY 198
PARV L+ +P+++ IR+KNLF+V+DCK++WQ +GDYLCVKVDR++K KK +
Sbjct: 384 PARVALISIPSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKK--------STF 435
Query: 199 YNFEIFHMREKEIPVDSVEIKEPIQAFAWEPVGSKFAIIHG-----DPANI--SISFY-- 351
N EIF +REK IPV+ V++K+ + FAWEP +FAII + N+ ++SFY
Sbjct: 436 SNLEIFRIREKNIPVEVVDLKDVVLNFAWEPKSDRFAIISANDQVLNSTNVKTNLSFYGF 495
Query: 352 QVNTGQAPTLRK--KFERKPFNHLFWSPSGQFIVLANLG-LTGGALEFLDTNDFT----- 507
+ T R F++K N LF +P G+F+V A LG T LEF D + T
Sbjct: 496 EQKKNTPSTFRHIITFDKKTCNSLFMAPKGRFMVAATLGSSTQYDLEFYDLDFDTEKKEP 555
Query: 508 --IMNV-----CDHYQMSGIEWDPTGRYVVT 579
+ NV +H+ M+ +EWDP+GRYV T
Sbjct: 556 DALANVQQIGSAEHFGMTELEWDPSGRYVTT 586
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 30.3 bits (65), Expect = 0.22
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 391 FERKPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDHY--QMSGIEWDPTG 564
F + P N +SP Q++ L + G L+ D +++V Y ++ + W P G
Sbjct: 320 FSKSPINGFCFSPDYQYLALVS---ERGTLKLFDFVKEHVLDVFHSYFAGLTCVTWSPDG 376
Query: 565 RYVVTG 582
+++ G
Sbjct: 377 KFIAIG 382
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 399 PLELLAQSRRLPGVHLVEADRDVRRVTVDY-SELRPDRFPSESLYGFLNLDR 247
P E + + +++ GVH VE +RDV + +Y + R S S +L L R
Sbjct: 72 PREYIEELKKIHGVHHVEENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHR 123
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 29.5 bits (63), Expect = 0.38
Identities = 15/66 (22%), Positives = 34/66 (51%)
Frame = +1
Query: 76 LFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKNDIKYSGMYYNFEIFHMREKEIPVDSVE 255
+F + D + Q S D +KVD Y +++ K+++ + Y + + ++ I +DS
Sbjct: 923 IFEILD-SLESQMSNDSSAIKVDVYDTIQRSKDELFHYCFYDWYSFKGLTDRLIEIDSPY 981
Query: 256 IKEPIQ 273
I+ ++
Sbjct: 982 IQSYLE 987
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 400 KPFNHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVC-DHYQMSGIEW 552
KP +H S + + GL GAL+F+ + + VC +H + +G+ +
Sbjct: 215 KPSDHAVLSSYIVYQIFREAGLPAGALQFIPGDAVEVSKVCFNHPEFAGLHF 266
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 256 SRQNQRVSPSLSYGKFQNYNTSQSILYHFCPSSL*NNDRLSHTDSRHSSASVSYNRPRRT 77
S +N R PS + Y + LY F + L ++ ++ D R A + P
Sbjct: 367 SARNGRAVPSFPVWRGNTYEKFREGLYFFIEALLHDSHFATNVDVRKFFAKSMRSHPLVD 426
Query: 76 NSWNGFPYD 50
+ +NGF D
Sbjct: 427 DIYNGFDVD 435
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 397 RKPFNHLFWSPSGQFIVLANLGLTGGALEFLD--TNDFTIMNVCDHYQMSGIEWDPTGRY 570
R N + W+P G+ ++ G + G + T +F ++N Y + EW GR+
Sbjct: 81 RHVINVVRWTPDGRRLLT---GSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSTDGRW 137
Query: 571 VVTG 582
+++G
Sbjct: 138 LISG 141
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 27.1 bits (57), Expect = 2.0
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 118 GDYLCVKVDRYSKVKKDKNDIKYSGMY-YNFEIFHMREKEIPVDSVEIKEPIQAFAWEPV 294
GDY+ V V + +K+ KY G+ +I+H PV ++++ Q P
Sbjct: 306 GDYINVLV---TDIKESGVIAKYMGVVDVTSDIYHSS----PVKGEDLEDKFQLAKSVPA 358
Query: 295 GSKFAIIHGDPANISISF 348
F +I GDP I++SF
Sbjct: 359 RVLF-VIPGDPPKIAVSF 375
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 340 ISFYQVNTGQAPTLRKKFERKPFNHLFWSPSGQFIVLA 453
I FY +TG L +K + KP ++W+ G+F++LA
Sbjct: 447 ICFYDWDTG---ILVRKIDVKP-KGVYWNDDGRFVILA 480
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 415 LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNV-CDH-YQMSGIEWDPTGRYVVT 579
L WS F++ G +L D + ++ DH + + G+ WDP +Y+V+
Sbjct: 134 LCWSVDSNFLIA---GAMDNSLRLYDAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVS 187
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 421 WSPSGQFIVLANLGLTGG-ALEFLDTNDFT-IMNVCDHYQ-MSGIEWDPTGRYVVT 579
W+P+G +V G TGG L D + + ++ H + + G+ WDP G++ ++
Sbjct: 334 WNPNGNCVVC--WGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLS 387
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 256 SRQNQRVSPSLSYGKFQNYNTSQSILYHFCPSSL*NNDRLSHTDSRHSSASVSYNR 89
S +R PS Y F + +T++ YHF +L + +S +S S+++S N+
Sbjct: 356 STLEKRTLPSFPYNPFFSSSTAEIDPYHFQGLTL-STSPISGVESSSLSSAISRNQ 410
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 415 LFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVCDHYQ-MSGIEWDPTGRYVVT 579
L WS Q +V ++GL + + T + + H + GI +DP G+Y T
Sbjct: 140 LCWSYDSQLVV--SVGLDSSIIVWNGTTFERLKRIEAHQSHVKGITFDPAGKYFAT 193
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 202 NFEIFHMREKEIPVDSVEIKEPIQAFAWEPVGSKFAIIHGDPANISISF-YQVNTGQ 369
+FE + +E+E+ V V+ K+P EP+ +K + +++ + Y+V GQ
Sbjct: 33 SFETCNTKERELMVQQVDSKKPETPTDLEPLANKLEGPLSERVHLNTTLDYEVLRGQ 89
>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +1
Query: 85 VADCKIHWQKSGDYLCVKVDRYSKVKKDKNDIKYSGMYYNFEIFHMREKEIPV 243
+A C + DY K+ KK + +I Y G + F + E E+P+
Sbjct: 169 IASCSALNVRGNDYNLGKLKYDKNAKKLRFEIAYQGSSSFIKCFDLNEVELPL 221
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 6.2
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -1
Query: 420 EQMVERLPLEL--LAQSRRLPGVHLVEADRDVRRVTVDYSELRPDRFPSESLYGFLNLDR 247
EQ+ RL LEL L + R+ +A + V D S+LR DR + +
Sbjct: 307 EQVSIRL-LELIDLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRK----KIQL 361
Query: 246 INGYLLLSHMENF 208
N Y+ LSH +NF
Sbjct: 362 RNEYIKLSHQQNF 374
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +3
Query: 417 VLVTLGA-VHSARQLGSHRWSFGVF 488
V+ TLGA V S + G+ RW FG+F
Sbjct: 310 VVSTLGASVISDKLAGNPRWPFGLF 334
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 305 NFDPTGSQAKACMGSLISTESTGISFSLIWKISKL*YIPEY 183
N DP S A + S+++ ++T SFS + I L Y+P +
Sbjct: 118 NVDPEISNA---LWSVLTWKNTSCSFSTLMSILALVYVPSW 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,769
Number of Sequences: 5004
Number of extensions: 58693
Number of successful extensions: 192
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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