Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D15
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.2
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 26 5.2
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 25 6.8
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 6.8
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 9.0
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.0
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 9.0
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 182 VTLYMTEINYLFTQIIICFVSTLHRPCVFF 271
++ + TEIN+L CF S LH C+F+
Sbjct: 710 ISRFTTEINFLR-----CFASLLHNCCIFY 734
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 125 FEKLISILLYSYYCQIIQTVTLYMTEINYLF 217
+++L ++LYS+Y + + LYMT+ Y F
Sbjct: 960 YQRLSKLILYSFY----KNIALYMTQFWYAF 986
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 139 FYIIIFILLSNYTNSYIIYDRNKLLIYSNYYL 234
FYI+I I+ Y+I KLL+ SNY L
Sbjct: 53 FYILIMIIQHLKEIHYLISASAKLLLASNYLL 84
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -2
Query: 406 HQNT*WTIFIVPS*TLQYFILIVANVINYLMIITIINLTSNYYN 275
H+N W + +YF+ + + I L +T +NL +YN
Sbjct: 36 HENVSWISWFCSRPGREYFVEVKEDFIEDLFNLTGLNLAVPFYN 79
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 459 RENIVMPCALLNVLQYCSVPVISYLLLYTTIIT*GCQLVY 578
RENI LL + S P+I+YL +Y C +Y
Sbjct: 395 RENIFTLPNLLTFSRLLSAPLIAYLYIYDYTKAAACFFLY 434
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 470 NILSRSSYEEHSFSKIINYLAAPEHIMDNIHCTLVNITIFYLNS 339
N++ S YE+H + INY I + L++ F++ S
Sbjct: 661 NVIYNSKYEDHGKNLPINYFGLDHFIHLRVWYVLLHKIYFFIAS 704
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 550 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 440
+VVY+N R+ T + TF+K Q I +FS ++VT++
Sbjct: 77 VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 550 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 440
+VVY+N R+ T + TF+K Q I +FS ++VT++
Sbjct: 77 VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 550 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 440
+VVY+N R+ T + TF+K Q I +FS ++VT++
Sbjct: 77 VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 562 PYVIIVVYNNRYDITGTEQYCNTFNKAQGITIFSRDQVTKNI 437
PY N Y ++ E+YC+ F K + F ++T++I
Sbjct: 339 PYEFGFETGNYYTLSNFEKYCDNFKK-NYFSKFKDSEITEDI 379
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = -2
Query: 550 IVVYNN----RYDITGTEQYCNTFNKAQGITIFSRDQVTKN 440
+VVY+N R+ T + TF+K Q I +FS ++VT++
Sbjct: 77 VVVYHNKFFPRFIRTHSINSIRTFSKFQVIILFSIEKVTRS 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,971
Number of Sequences: 5004
Number of extensions: 49868
Number of successful extensions: 104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -