Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D15
         (629 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    41   0.004
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   4.5  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 40.7 bits (91), Expect = 0.004
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 80  FIK*YIYCLINIMENFEKLISILLYSYYC-QI-IQTVTLYMTEINYLFTQIIICFVSTLH 253
           +I  YIY  I+I  +    +SI +Y Y C QI I   TLY+    Y+ T I IC  +++ 
Sbjct: 98  YIYVYIYTHIHICVHINMYVSIYVYIYTCIQIYIYMYTLYVCTYTYMCTYIHICIHTSII 157

Query: 254 RPCVFFEI 277
             CV+  I
Sbjct: 158 YVCVYIHI 165


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 79  LYQMIYILFN*YYGKFRETYFYIIIFILLSNYTNSYI-IYDRNKLLIYSNYYLF 237
           +Y  +YI    Y+  F   Y YI I+I +  Y   YI +Y    + IY + +++
Sbjct: 27  IYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIY 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,982,060
Number of Sequences: 237096
Number of extensions: 1405486
Number of successful extensions: 1790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)