Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D15
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical p...    29   2.1  
U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm recept...    28   4.8  
U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm recept...    28   6.3  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    27   8.4  

>U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical
           protein C27H5.4a protein.
          Length = 521

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 149 LYSYYCQIIQTVTLYMTEINYLFT-QIIICFVSTLHRPCVFFEIIIIRS*VYNSYNH*IV 325
           L SY   +I  ++     INY+FT + I  F    H P  + +++ I   V+N+ N  ++
Sbjct: 7   LLSYSALLIGLISFAADSINYVFTSKYIQVFFDEFHLPPSYLKVVQILFLVWNAVNDPMM 66

Query: 326 NYV 334
            Y+
Sbjct: 67  GYM 69


>Z93383-11|CAI58635.1|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.16 protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 124 FRETYFYIIIFILLSNYTNSYIIYDRNKLLIYSNYYL-FCVDFTPSL 261
           F +T F+I +++L S +    + Y    LLIY       C  FT S+
Sbjct: 15  FAQTVFHINLYLLFSTFFTKKVCYRPELLLIYCKIAADICYSFTVSI 61


>U41746-1|AAA83330.3|  347|Caenorhabditis elegans Seven tm receptor
           protein 177 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +3

Query: 57  VTQCLIVPLSNDIYIV*LILWKISRNLFLYYYIHIIVKLYKQL 185
           V  C+  PL+  I+++ LIL K S+ +  Y Y+ I V +Y+ L
Sbjct: 16  VGTCIANPLN--IFLIYLILTKSSKKIGNYKYLMIYVSIYEIL 56


>U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm receptor
           protein 220 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 48  LDVVTQC-LIVPLSNDIYIV*LILWKISRNLFLYYYIHIIVKLYKQLH 188
           L + T+C L   +  + ++V LIL K  R L +Y Y+ + + +++ L+
Sbjct: 11  LHIFTKCSLFFAILFNTFLVYLILTKSPRQLGVYKYLMVFISIFEILY 58


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 121 KFRETYFYIIIFILLSNYTNSYIIYDRNKLLIYSNYYLFCVDFTPSLCIF 270
           KF  T  Y ++ +L+ +     II D +K    S + LFCV F  +LC +
Sbjct: 8   KFMVTTSYGVLSMLIYSGITCVIIND-HKTFKSSFFKLFCVGFFMNLCTY 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,079
Number of Sequences: 27780
Number of extensions: 268031
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)