Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D14
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.25 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 593 RRPSERNQCRSQM 555
           RRPS RN C SQM
Sbjct: 402 RRPSRRNSCESQM 414


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 45  SRDTHLNIPTLSYTILI*N 101
           +R THLN    SYTI+I N
Sbjct: 473 ARFTHLNHADFSYTIVINN 491


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/71 (19%), Positives = 31/71 (43%)
 Frame = +2

Query: 8   VKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDK 187
           ++     D +I +  + ++  Y ILYD +   +  +  F ++ER+  +  +        +
Sbjct: 364 LREADFKDTEILIGNNENEGTYFILYDFNDIFEKDQASFLERERF--LGIINNIFKNMSQ 421

Query: 188 YEKNVIDFMDT 220
            E+  I F  T
Sbjct: 422 IEREAITFQYT 432


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 346 ELIDARLRHCQENVFNSTGAEWKIQKRLFTQNNIGQT 236
           EL++A L+  Q         E +IQK+  T N I +T
Sbjct: 766 ELVEAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKT 802


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/71 (19%), Positives = 31/71 (43%)
 Frame = +2

Query: 8   VKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDK 187
           ++     D +I +  + ++  Y ILYD +   +  +  F ++ER+  +  +        +
Sbjct: 364 LREADFKDTEILIGNNENEGTYFILYDFNDIFEKDQASFLERERF--LGIINNIFKNMSQ 421

Query: 188 YEKNVIDFMDT 220
            E+  I F  T
Sbjct: 422 IEREAITFQYT 432


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 573 SMQESDGSSNVALSASDSLVLFLSPSIRT 487
           S+ +++      +S  D LVL+ +PSI T
Sbjct: 156 SISQANEGFCAVISMHDGLVLYTTPSICT 184


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 14  SKQITDIKIYLAGHTSKYPYPILYDTDLKL 103
           S + TD+++ +A     +P+  + D  L+L
Sbjct: 278 SSEATDLRMGVASFCKAFPWHFVVDRQLEL 307


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 573 SMQESDGSSNVALSASDSLVLFLSPSIRT 487
           S+ +++      +S  D LVL+ +PSI T
Sbjct: 151 SISQANEGFCAVISMHDGLVLYTTPSICT 179


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 260 HSKQYWTNQVLF*VYP 213
           ++K +W N + + VYP
Sbjct: 20  NNKGWWKNAIFYQVYP 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,946
Number of Sequences: 438
Number of extensions: 3087
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)