Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D13
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    46   2e-06
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    40   2e-04
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    40   2e-04
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    31   0.062
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    26   2.3  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   4.1  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    24   7.1  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 36/53 (67%)
 Frame = +2

Query: 11  FDEENTGLIGXXXXXXXXXXMGDRFTDDDVDEMLREAPIRDGIFDYVEFTRIL 169
           FD++ TG+IG          +G++ +++++DE+L+  P++DG+ +Y +F +++
Sbjct: 86  FDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVKDGMVNYHDFVQMI 138


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +2

Query: 11  FDEENTGLIGXXXXXXXXXXMGDRFTDDDVDEMLREAPI-RDGIFDYVEFTRIL 169
           FD++  G I           +G+R + ++V +M+REA    DG+ +Y EF+R++
Sbjct: 94  FDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVI 147


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 39.5 bits (88), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 11  FDEENTGLIGXXXXXXXXXXMGDRFTDDDVDEMLREA-PIRDGIFDYVEFTR 163
           FD++N+G I           +G++ +D++V  M++EA P   G FDY +F +
Sbjct: 87  FDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQ 138


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 31.1 bits (67), Expect = 0.062
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 11  FDEENTGLIGXXXXXXXXXXMGDRFTDDDVDEMLREAPIRDGIFDYVEFTRILKHGAKDK 190
           FD+  +G I           MGDR    +V+ +LR +    G+F Y +F   +  G+KD 
Sbjct: 126 FDDTQSGKIPISTMRDALSSMGDRMDPQEVESILR-SYTSHGVFYYEKFVDAIA-GSKDS 183

Query: 191 D 193
           +
Sbjct: 184 N 184


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 127 YGSFTKHFVHIVISEAITHSGQQFTKSFLTDQTSVFLIKT 8
           +G   K   H  +S + T+SGQ+  KSF + +  V   KT
Sbjct: 54  FGGIKKFHSHCQLSSSYTNSGQKSFKSFNSLRFIVLKSKT 93


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 301 NIAHIFHFFLRKSMFFNS 248
           ++AH FH FL  S+FF S
Sbjct: 196 SLAHEFHNFLPSSIFFGS 213


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 337 NFSIEN*LLLTFNIAHIFHFFLRKSMFFNSNLCIFY*MEFANGICLLFVLILSTMF 170
           NF++ N     F ++      L+  +F N+ +CIFY  + A  +C  ++  L+  F
Sbjct: 12  NFNVTN---NNFQVSCFNPILLKIILFLNTIVCIFYVYKIA--LCNEYIRFLAKCF 62


>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 310 LTFNIAHIFHFFLRKSMFFN-SNLCIFY 230
           LTF  +HIF F ++  ++ N  NL IF+
Sbjct: 125 LTFEGSHIFEFPVKTRLYQNLQNLNIFF 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,392
Number of Sequences: 5004
Number of extensions: 25165
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)