Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D11
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   162   3e-41
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   161   5e-41
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   7.9  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  162 bits (393), Expect = 3e-41
 Identities = 75/133 (56%), Positives = 95/133 (71%)
 Frame = +1

Query: 76  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 255
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 256 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLLIVLD 435
             E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP L+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 436 PAQDHQPITEASY 474
           P  D Q I EAS+
Sbjct: 130 PRADAQAIKEASF 142


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  161 bits (391), Expect = 5e-41
 Identities = 72/137 (52%), Positives = 97/137 (70%)
 Frame = +1

Query: 64  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 243
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 244 XXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPMLL 423
                 E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REP L+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 424 IVLDPAQDHQPITEASY 474
           +V DP  D Q I EAS+
Sbjct: 125 VVTDPRADAQAIKEASF 141


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 49  NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGD-GTHVIN 207
           N+T+SG  D  +++   +        +L A+N N Q E      R + G H+++
Sbjct: 204 NSTVSGSEDSASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVD 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,454
Number of Sequences: 5004
Number of extensions: 34604
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)