Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D11
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   163   5e-41
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   161   4e-40
04_04_0157 + 23165638-23166633                                         28   3.4  
02_03_0106 + 15292869-15296138                                         28   4.5  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  163 bits (397), Expect = 5e-41
 Identities = 77/140 (55%), Positives = 95/140 (67%)
 Frame = +1

Query: 52  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 231
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 232 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 411
                     E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F E
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122

Query: 412 PMLLIVLDPAQDHQPITEAS 471
           P LLI+ DP  DHQPI E++
Sbjct: 123 PRLLILTDPRTDHQPIKESA 142


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  161 bits (390), Expect = 4e-40
 Identities = 78/138 (56%), Positives = 95/138 (68%), Gaps = 2/138 (1%)
 Frame = +1

Query: 64  GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 237
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 238 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPM 417
                   E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EP 
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPR 124

Query: 418 LLIVLDPAQDHQPITEAS 471
           LLI+ DP  DHQPI E++
Sbjct: 125 LLILTDPRTDHQPIKESA 142


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 227 FSHVRRRLITCVPSPRRL 174
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 468  SFSNWLMILSRVQNNQQHWFAECGLDLVSKCTRSETSSNW 349
            +F  WL +L R ++   H+  +C L L+  C   +   NW
Sbjct: 1015 AFPRWLELLIRKRDGLCHFELQCSLSLLRSCL--DGGKNW 1052


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,313,838
Number of Sequences: 37544
Number of extensions: 261157
Number of successful extensions: 581
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)