Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D10
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0544 - 3992381-3992500,3992718-3992757,3993121-3993203,399...    28   4.9  

>02_01_0544 -
           3992381-3992500,3992718-3992757,3993121-3993203,
           3993322-3993552,3993661-3993705,3993958-3994079,
           3994408-3994564,3994713-3994778,3994872-3994994
          Length = 328

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 593 VEWFTSYKSTSGETDNVSFY 534
           V+WFTS +  SGE  N SFY
Sbjct: 212 VDWFTSGRYESGEKWNFSFY 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,598
Number of Sequences: 37544
Number of extensions: 217317
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)