Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D09
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0124 + 6849034-6851502                                           28   4.6  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    27   6.0  

>05_02_0124 + 6849034-6851502
          Length = 822

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +3

Query: 9   PPPPK*SSAPMTTLTRLP----SHPRLASLH 89
           PPPP   S P +T  R P    +HP L+S H
Sbjct: 17  PPPPPPPSPPNSTFPRYPKSLAAHPALSSSH 47


>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
            30287611-30287920,30288561-30290197
          Length = 1082

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 9    PPPPK*SSAP--MTTLTRLPSHPRLASLHRHSYFLHPSLTTC 128
            PPPP+    P  MT L RL      A +H HS   +P L  C
Sbjct: 894  PPPPEDEPRPKKMTILKRLKD----ARVHNHSSSKNPPLNVC 931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,242,513
Number of Sequences: 37544
Number of extensions: 221277
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)