Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D09
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine rece...    28   3.1  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      27   5.5  

>Z66500-2|CAA91304.2|  500|Caenorhabditis elegans Hypothetical
           protein T05C12.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 13  PPRSDQVPL*RLLPGCPVTLVLQVCIVTLISFILPSRRVQTN 138
           PP+S  VP+      C + LV   C+ T+++  L  R+ +T+
Sbjct: 312 PPQSQSVPILAAFFSCCLMLVACSCVFTVLTLSLHHRKPETH 353


>U58754-5|AAB00672.2|  330|Caenorhabditis elegans Serpentine
           receptor, class sx protein14 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 172 REFYYY*MSRDNCLTVIIFVSYFKLYVIYYR 264
           R ++YY M+  + LTVI +VS F L  IY++
Sbjct: 171 RSYWYYVMTAFSVLTVIFYVSAFAL--IYFK 199


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 282 NCFNKCFIDDQLYARGSARLSAIFFRKCINCVYG 383
           N + + F+  +  A+G  R SA+   +C++C+ G
Sbjct: 475 NIYPELFVPGESVAKGEVRNSAVQPARCLDCMVG 508


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 282 NCFNKCFIDDQLYARGSARLSAIFFRKCINCVYG 383
           N + + F+  +  A+G  R SA+   +C++C+ G
Sbjct: 475 NIYPELFVPGESVAKGEVRNSAVQPARCLDCMVG 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,748,677
Number of Sequences: 27780
Number of extensions: 206382
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)