Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D09
(487 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 24 0.75
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 2.3
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 22 4.0
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 21 7.0
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 21 7.0
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 9.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 9.2
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 9.2
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 9.2
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 9.2
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 9.2
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 21 9.2
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 21 9.2
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.2
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.2
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 24.2 bits (50), Expect = 0.75
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 151 PSRCIKCREFYYY*MSRDNCLTVIIFVS---YFKLY 249
PS C+ C+ F+Y + + +FV Y+K++
Sbjct: 191 PSHCVVCQNFFYQIYATLGSFYIPLFVMIQVYYKIF 226
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.6 bits (46), Expect = 2.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 214 SNNYHVTSNNNRIPYI*YSD*VSKLNWFVHV 122
SNNY+ +NN + Y Y+ + N+ +++
Sbjct: 319 SNNYNYNNNNYKYNYNNYNKKLYYKNYIINI 349
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.8 bits (44), Expect = 4.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 175 EFYYY*MSRDNCLTVIIFVSYFKLYVIYYRK 267
+ +YY + NC I Y L V+ Y K
Sbjct: 164 DLHYYPLDSQNCTVEIESYGYTVLDVVMYWK 194
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 7.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 83 TCKTRVTGQPGK 48
T +T TG+PGK
Sbjct: 541 TSRTETTGEPGK 552
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 21.0 bits (42), Expect = 7.0
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 83 TCKTRVTGQPGK 48
T +T TG+PGK
Sbjct: 541 TSRTETTGEPGK 552
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 250 RII*NMKRK*LRSNNYHVTSNNN 182
+II ++ + +NNY NNN
Sbjct: 79 KIISSLSNNTIHNNNYKYNYNNN 101
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 250 RII*NMKRK*LRSNNYHVTSNNN 182
+II ++ + +NNY NNN
Sbjct: 79 KIISSLSNNTIHNNNYKYNYNNN 101
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 250 RII*NMKRK*LRSNNYHVTSNNN 182
+II ++ + +NNY NNN
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNN 102
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 250 RII*NMKRK*LRSNNYHVTSNNN 182
+II ++ + +NNY NNN
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNN 102
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 250 RII*NMKRK*LRSNNYHVTSNNN 182
+II ++ + +NNY NNN
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNN 102
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 250 RII*NMKRK*LRSNNYHVTSNNN 182
+II ++ + +NNY NNN
Sbjct: 80 KIISSLSNNTIHNNNYKYNYNNN 102
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 46 VVIGALDHFGGGGL 5
+V+GA + GGGGL
Sbjct: 39 IVVGANNGGGGGGL 52
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 20.6 bits (41), Expect = 9.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -2
Query: 438 KFKYLCYQN 412
+F YLCY+N
Sbjct: 6 RFPYLCYKN 14
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 20.6 bits (41), Expect = 9.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -2
Query: 438 KFKYLCYQN 412
+F YLCY+N
Sbjct: 44 RFPYLCYKN 52
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 20.6 bits (41), Expect = 9.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -2
Query: 438 KFKYLCYQN 412
+F YLCY+N
Sbjct: 97 RFPYLCYKN 105
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,044
Number of Sequences: 438
Number of extensions: 3116
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -