Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D07
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.35 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    29   0.35 
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    27   1.9  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.3  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    26   3.3  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   3.3  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    25   7.6  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   7.6  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -2

Query: 437 TIFTVTSAIL-NKYVISSGSHK--TESFITLDAHFSQVCTVTNIPPFT 303
           ++ + TS+IL N   I SG H+  T SF+    H SQV T+T +   T
Sbjct: 375 SVSSPTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLT 422


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 468 VKGYSLMKSYNHLYGYKCNTQQICYKFRFS*DRIFHHPGCPLL 340
           + G+ +++ YN LY    + +++  KFR   DR+ H    PLL
Sbjct: 768 ITGHGIIEDYNRLYKELNDQKEVLIKFR---DRLIHLMKLPLL 807


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 186 ADPFDNSTVPITD-CKQEKGLAHLPG 260
           ADP ++ST PI+D CKQ   L  LPG
Sbjct: 151 ADPSNSSTFPISDSCKQ--ALLPLPG 174


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 349 PTSPRYAQSRIYLHSPFTFCRILRHMLGLSPGKCAS-PFSCLQSVIGTVLLSNGSAHFGS 173
           P S ++ +  IYL     F  +L+  + LS        F     + G+V LSNGS     
Sbjct: 100 PLSEQFGRRPIYLIGYSVFA-LLQIPIALSVNLAMFLVFRFFSGLFGSVGLSNGSGSLAD 158

Query: 172 LFDRQ 158
           LF+++
Sbjct: 159 LFEKK 163


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 349 PTSPRYAQSRIYLHSPFTFCRILRHMLGLSPGKCAS-PFSCLQSVIGTVLLSNGSAHFGS 173
           P S ++ +  IYL     F  +L+  + LS        F     + G+V LSNGS     
Sbjct: 100 PLSEQFGRRPIYLIGYSVFA-LLQIPIALSVNLAMFLVFRFFSGLFGSVGLSNGSGSLAD 158

Query: 172 LFDRQ 158
           LF+++
Sbjct: 159 LFEKK 163


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -3

Query: 349 PTSPRYAQSRIYLHSPFTFCRILRHMLGLSPGKCAS-PFSCLQSVIGTVLLSNGSAHFGS 173
           P S ++ +  IYL     F  +L+  + LS        F     + G+V LSNGS     
Sbjct: 100 PLSEQFGRRPIYLIGYSVFA-LLQIPIALSVNLAMFLVFRFFSGLFGSVGLSNGSGSLAD 158

Query: 172 LFDRQ 158
           LF+++
Sbjct: 159 LFEKK 163


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -2

Query: 341 SQVCTVTNIPPFTIYFLSNFATHAGSQSW*MCKSFLLFTICYRDCAVVKWISTLWIIV*S 162
           S   T T   P +   L N    A  +S   C+ +    I  R  + + W   LWI    
Sbjct: 86  SGAATPTRSAPKSSAGLINSGLRALDRSGKPCRRWEKKPISIRSISTIVWKLPLWIGTPD 145

Query: 161 AIPTFNTPNV 132
           +IP  NTP +
Sbjct: 146 SIP--NTPEL 153


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 414 NTQQICY-KFRFS*DRIFHHPGCPLLPGMHSHEYTSIHH 301
           +T  IC  KF+FS ++    P      G+H+H + +++H
Sbjct: 74  DTYSICNPKFQFSSEQNPRRPLTKPSEGVHNHGFDNVNH 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,213
Number of Sequences: 5004
Number of extensions: 37286
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)