Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D07
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0866 + 22006822-22006899,22006997-22007080,22007621-220077...    29   1.9  
05_07_0180 - 28223175-28223536,28223628-28223811                       27   7.5  

>08_02_0866 +
           22006822-22006899,22006997-22007080,22007621-22007719,
           22007864-22007908,22008170-22008265,22009150-22009227,
           22009864-22009949,22010038-22010104,22010192-22010254,
           22010332-22010433,22010559-22010663,22010748-22010840,
           22011380-22011468,22012049-22012268,22012816-22012899,
           22013221-22013337,22013399-22013473,22013589-22013675,
           22013766-22013828,22014833-22014949,22015231-22015323,
           22015794-22015919,22015992-22016092,22016917-22016996,
           22017023-22017093,22017200-22017256,22017430-22017573
          Length = 839

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/88 (25%), Positives = 37/88 (42%)
 Frame = -3

Query: 448 EELQPSLRLQVQYSTNML*VPVLIRQNLSSPWMPTSPRYAQSRIYLHSPFTFCRILRHML 269
           E +  S   Q     N   +P+L R +    ++  +P+YA+S +YL     F ++    L
Sbjct: 159 ENVSTSFYSQTMNIGNEQFLPLLKRLDDCISYVENNPQYAESAVYL---VKFRQLQSRAL 215

Query: 268 GLSPGKCASPFSCLQSVIGTVLLSNGSA 185
           G+      S      S +   +  NGSA
Sbjct: 216 GMIRSHVLSILKAASSQVQAAIRGNGSA 243


>05_07_0180 - 28223175-28223536,28223628-28223811
          Length = 181

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 315 YIRDCAYLGEVGIQGDERFCLMRTGTYNIFVEYCTCNRKDGCNSSSMNN 461
           Y  D A    + + GD+   L R+G YNI VE  T    D C+  ++ N
Sbjct: 45  YYADWARTRNISV-GDKLMFLYRSGVYNI-VEVPTKELFDACSMRNITN 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,448,190
Number of Sequences: 37544
Number of extensions: 233593
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)