Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D07
         (468 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX928748-1|CAH74051.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AL391824-1|CAI17865.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AL135797-1|CAI17871.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AL135796-1|CAI17854.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AL133553-2|CAI17858.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AL133515-1|CAI17853.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AL121996-1|CAI17844.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AL118512-1|CAI17864.1| 5635|Homo sapiens protein ( Human DNA seq...    32   0.86 
AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein.           32   0.86 
CR457174-1|CAG33455.1|  282|Homo sapiens 8D6A protein.                 29   6.1  
BC007083-1|AAH07083.1|  282|Homo sapiens CD320 molecule protein.       29   6.1  
BC000668-1|AAH00668.1|  282|Homo sapiens CD320 molecule protein.       29   6.1  
AY358420-1|AAQ88786.1|  282|Homo sapiens SGGW198 protein.              29   6.1  
AL365455-1|CAB97010.1|  282|Homo sapiens 8D6 antigen protein.          29   6.1  
AK222623-1|BAD96343.1|  282|Homo sapiens 8D6 antigen variant pro...    29   6.1  
AF161254-1|AAF61850.1|  282|Homo sapiens 8D6 antigen protein.          29   6.1  

>BX928748-1|CAH74051.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone RP11-465I11 on chromosome 1 Contains  part of
            the gene for hemicentin (FIBL-6).  ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AL391824-1|CAI17865.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone GS1-268N14 on chromosome 1 Contains  part of
            the gene for hemicentin.  ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AL135797-1|CAI17871.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone GS1-77J13 on chromosome 1 Contains  part of
            the gene for hemicentin.  ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AL135796-1|CAI17854.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone GS1-164L12 on chromosome 1 Contains  part of
            the gene for hemicentin.  ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AL133553-2|CAI17858.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone GS1-174L6 on chromosome 1 Contains the3' end
            of the gene for hemicentin, the PRG4 gene for
            proteoglycan 4 ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AL133515-1|CAI17853.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone GS1-153O3 on chromosome 1 Contains  part of
            the gene for hemicentin.  ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AL121996-1|CAI17844.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone GS1-118G19 on chromosome 1q25.1-31.1  Contains
            the 5' end of the gene for hemicentin.  ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AL118512-1|CAI17864.1| 5635|Homo sapiens protein ( Human DNA sequence
            from clone GS1-248A21 on chromosome 1q31.1-31.3  Contains
            part of the gene for hemicentin (FIBL-6).  ).
          Length = 5635

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2292 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2329


>AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein.
          Length = 5636

 Score = 32.3 bits (70), Expect = 0.86
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 398  VISSGSHKTESFITLDAHFSQVCTVTNIPPFTIYFLSN 285
            + +SGSH TE  +T     S  C V  IPP T+ ++ +
Sbjct: 2293 ITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKD 2330


>CR457174-1|CAG33455.1|  282|Homo sapiens 8D6A protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W C  + D  C+D  D     I  C Q+      PGL P  C  +     G  + +R+C+
Sbjct: 72  WRC--DRDLDCSDGSDEEECRIEPCTQKGQCPPPPGL-PCPCTGVSDCSGGTDKKLRNCS 128

Query: 333 YL 338
            L
Sbjct: 129 RL 130


>BC007083-1|AAH07083.1|  282|Homo sapiens CD320 molecule protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W C  + D  C+D  D     I  C Q+      PGL P  C  +     G  + +R+C+
Sbjct: 72  WRC--DRDLDCSDGSDEEECRIEPCTQKGQCPPPPGL-PCPCTGVSDCSGGTDKKLRNCS 128

Query: 333 YL 338
            L
Sbjct: 129 RL 130


>BC000668-1|AAH00668.1|  282|Homo sapiens CD320 molecule protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W C  + D  C+D  D     I  C Q+      PGL P  C  +     G  + +R+C+
Sbjct: 72  WRC--DRDLDCSDGSDEEECRIEPCTQKGQCPPPPGL-PCPCTGVSDCSGGTDKKLRNCS 128

Query: 333 YL 338
            L
Sbjct: 129 RL 130


>AY358420-1|AAQ88786.1|  282|Homo sapiens SGGW198 protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W C  + D  C+D  D     I  C Q+      PGL P  C  +     G  + +R+C+
Sbjct: 72  WRC--DRDLDCSDGSDEEECRIEPCTQKGQCPPPPGL-PCPCTGVSDCSGGTDKKLRNCS 128

Query: 333 YL 338
            L
Sbjct: 129 RL 130


>AL365455-1|CAB97010.1|  282|Homo sapiens 8D6 antigen protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W C  + D  C+D  D     I  C Q+      PGL P  C  +     G  + +R+C+
Sbjct: 72  WRC--DRDLDCSDGSDEEECRIEPCTQKGQCPPPPGL-PCPCTGVSDCSGGTDKKLRNCS 128

Query: 333 YL 338
            L
Sbjct: 129 RL 130


>AK222623-1|BAD96343.1|  282|Homo sapiens 8D6 antigen variant
           protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W C  + D  C+D  D     I  C Q+      PGL P  C  +     G  + +R+C+
Sbjct: 72  WRC--DRDLDCSDGSDEEECRIEPCTQKGQCPPPPGL-PCPCTGVSDCSGGTDKKLRNCS 128

Query: 333 YL 338
            L
Sbjct: 129 RL 130


>AF161254-1|AAF61850.1|  282|Homo sapiens 8D6 antigen protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W C  + D  C+D  D     I  C Q+      PGL P  C  +     G  + +R+C+
Sbjct: 72  WRC--DRDLDCSDGSDEEECRIEPCTQKGQCPPPPGL-PCPCTGVSDCSGGTDKKLRNCS 128

Query: 333 YL 338
            L
Sbjct: 129 RL 130


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,243,593
Number of Sequences: 237096
Number of extensions: 1411881
Number of successful extensions: 2711
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2711
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)