Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D07
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical p...    49   1e-06
U88168-6|AAC24401.1|  127|Caenorhabditis elegans Hypothetical pr...    43   1e-04
U88168-7|AAC24396.2|  132|Caenorhabditis elegans Hypothetical pr...    35   0.025
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    30   0.95 
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    30   0.95 
Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     29   2.2  
Z81098-4|CAB03181.1|  180|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AF324057-1|AAK01418.1|  180|Caenorhabditis elegans Ly-6-related ...    28   3.8  
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    27   5.1  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    27   5.1  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    27   6.7  
AL032621-2|CAA21491.2|  147|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U56965-11|AAB52666.1|  137|Caenorhabditis elegans Hypothetical
           protein C15H9.9 protein.
          Length = 137

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +3

Query: 141 SIKCWNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYI 320
           +I C+ C SN +P C    D +                 G     CRKI Q V G    +
Sbjct: 19  NISCYQCTSNENPTCDANDDGALEAFKKTCTPLTEGTFKGNAAVGCRKITQSVEGVLSVV 78

Query: 321 RDCAYLGEVGIQGDERFCLMRTGTYNIFVEYCTC-NRKDG--CNS 446
           R+CAY GE  + G     L +TG + I + Y  C N K G  CNS
Sbjct: 79  RECAYSGE-PVDG-----LKKTGNHAIRIHYYQCENEKAGTPCNS 117


>U88168-6|AAC24401.1|  127|Caenorhabditis elegans Hypothetical
           protein K11H12.7 protein.
          Length = 127

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 141 SIKCWNCRSNNDPKCADPFD--NSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWR 314
           ++ C+ C S N P+C   ++  N   P+      K    +  ++P  CR  RQ V  E  
Sbjct: 16  ALNCYICNSLNQPECVHNYEKFNKICPV------KSFGGMKSVKPLGCRVSRQYVKEETS 69

Query: 315 YIRDCAYLGE 344
            +R+CAY GE
Sbjct: 70  IVRECAYTGE 79


>U88168-7|AAC24396.2|  132|Caenorhabditis elegans Hypothetical
           protein K11H12.6 protein.
          Length = 132

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 144 IKCWNCRSNNDPKCADPFD--NSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRY 317
           + C+ C S   P C D +   N+  P+      + L  +    P  CR  RQ    +   
Sbjct: 17  LNCYICNSKKQPDCIDNYQAFNTICPV------RSLGGVKLHEPVGCRVTRQYSKEKMWI 70

Query: 318 IRDCAYLGE 344
           IR+C YLGE
Sbjct: 71  IRECGYLGE 79


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 331 AQSRIYLHSPFTFCRILRHMLGLSPGKCASPFSCLQSVIGTVLLSNGSAHFGSLFDRQF 155
           + S  Y++SPF FC    H    S     S F+CL S++  +L S+ +  F  +F R+F
Sbjct: 61  SNSSKYIYSPFIFC----HRTANSCVAVCSLFTCLHSLV-LLLHSSKTTAFLGVFVRKF 114


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 331 AQSRIYLHSPFTFCRILRHMLGLSPGKCASPFSCLQSVIGTVLLSNGSAHFGSLFDRQF 155
           + S  Y++SPF FC    H    S     S F+CL S++  +L S+ +  F  +F R+F
Sbjct: 61  SNSSKYIYSPFIFC----HRTANSCVAVCSLFTCLHSLV-LLLHSSKTTAFLGVFVRKF 114


>Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical protein
            K04D7.4 protein.
          Length = 1159

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 309  WRYIRDCAYLGEVGIQGDERFCLMRTGTYNIFVEYCTCNRKD 434
            WR +  C Y GE+ +Q  + F L++     + V     +R D
Sbjct: 1002 WRKLPSCIYDGEIQLQHGDNFVLLQKDDQQLCVRIVNVSRAD 1043


>Z49067-1|CAA88849.2|  376|Caenorhabditis elegans Hypothetical
           protein C44F1.2 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +3

Query: 192 PFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQK-VNGEWRYI--RDCAYLGEVGIQGD 362
           P + +TVP+T C   KG+ HL   R   C  IRQ  +  E +Y+  +    LG  G Q D
Sbjct: 70  PLNATTVPVT-CGYVKGIMHLKLFR---CPGIRQACIEYESQYLTPKQFTELGGKGRQKD 125

Query: 363 ERFCL 377
            + C+
Sbjct: 126 WKACI 130


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 138 WSIKCWNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGL 263
           W   C NC     P C     ++  P+T  KQ K  + L GL
Sbjct: 511 WIYFCSNCDVKVHPHCTSALTDACYPVTQSKQ-KSKSRLSGL 551


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 138 WSIKCWNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGL 263
           W   C NC     P C     ++  P+T  KQ K  + L GL
Sbjct: 511 WIYFCSNCDVKVHPHCTSALTDACYPVTQSKQ-KSKSRLSGL 551


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 138 WSIKCWNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGL 263
           W   C NC     P C     ++  P+T  KQ K  + L GL
Sbjct: 464 WIYFCSNCDVKVHPHCTSALTDACYPVTQSKQ-KSKSRLSGL 504


>Z81098-4|CAB03181.1|  180|Caenorhabditis elegans Hypothetical
           protein K07A12.6 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 396 NIFVEYCTCNRKDGCNSSSMNN 461
           N  V+ C+C+ KDGCN  S+N+
Sbjct: 137 NEIVQVCSCD-KDGCNFDSIND 157


>AF324057-1|AAK01418.1|  180|Caenorhabditis elegans Ly-6-related
           protein HOT-5 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 396 NIFVEYCTCNRKDGCNSSSMNN 461
           N  V+ C+C+ KDGCN  S+N+
Sbjct: 137 NEIVQVCSCD-KDGCNFDSIND 157


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 153 WNCRSNNDPKCADPFDNSTVPITDCKQEKGLAHLPGLRPSMCRKIRQKVNGEWRYIRDCA 332
           W+  +N D   ++  ++   P++ C Q  G + L  L  S  R  +   N +WR+   C+
Sbjct: 138 WSQSTNQD---SEEIESPLFPVSCCTQITGASALNPLAKSYARCQQIGANRQWRHAVGCS 194


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 141 SIKCWNCRSNNDPKCADPFDNSTVPITDCKQ 233
           +IKC  C  +   KCA P    +V    CKQ
Sbjct: 669 AIKCERCTKSIHEKCAAPLLQQSVMCPTCKQ 699


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
 Frame = -3

Query: 424 LQVQYSTNML*VPV-LIRQNLS---SPWMPTSPRYAQSRIYLHSPFTFCRILRHMLGLSP 257
           L  Q ST +L + + LI QN +   S ++PT    AQS  ++++  T C+I+ ++     
Sbjct: 250 LSPQMSTALLNIYMSLISQNRTKSLSQFLPTLKLAAQSNEFINNRTTICKIIANI----- 304

Query: 256 GKCASPFSCLQSVIGTVLLSNGSA 185
           G+ +SP +  ++V   VL++  ++
Sbjct: 305 GRVSSPLAS-EAVDELVLMARNNS 327


>AL032621-2|CAA21491.2|  147|Caenorhabditis elegans Hypothetical
           protein Y45F3A.4 protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 372 CLMRTGTYNIFVEYCTCNRKDGCNSS 449
           C  RT    + V+ C CN  D CN S
Sbjct: 74  CHNRTSKSGVSVKICGCNAPDFCNFS 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,228,646
Number of Sequences: 27780
Number of extensions: 222170
Number of successful extensions: 645
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)