Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D07
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.40 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   3.8  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   6.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.7  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 326 VTNIPPFTIYFLSNFATHAGSQSW*MCKSFLLFTI 222
           +TN      YF+S +  +    +W +  SF++FT+
Sbjct: 10  ITNSSITETYFVSAYNLNQEDSNWIITNSFIIFTM 44


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 461 VIH**RVTTIFTVTSAILNKYVISSGSHKTESF 363
           VIH  R+  I   T  IL  Y + S    ++SF
Sbjct: 139 VIHQPRIIIIDLKTDKILRIYPLKSSDQTSDSF 171


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 456 SLMKSYNHLYGYKCNTQQICYKFRF 382
           SL  +YN+      N +Q+CY   +
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 456 SLMKSYNHLYGYKCNTQQICYKFRF 382
           SL  +YN+      N +Q+CY   +
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 456 SLMKSYNHLYGYKCNTQQICYKFRF 382
           SL  +YN+      N +Q+CY   +
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 456 SLMKSYNHLYGYKCNTQQICYKFRF 382
           SL  +YN+      N +Q+CY   +
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 456 SLMKSYNHLYGYKCNTQQICYKFRF 382
           SL  +YN+      N +Q+CY   +
Sbjct: 84  SLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 43  TRNIHIPTLLQ*IFAILIFY 102
           T N+ +PT+L     +L+FY
Sbjct: 237 TVNLILPTVLISFLCVLVFY 256


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 184 VLIHLTTAQSR*QIVNKRKDLH 249
           +L+HLT  Q R   ++   D+H
Sbjct: 887 LLLHLTPLQPRFYSISSSPDVH 908


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,733
Number of Sequences: 438
Number of extensions: 2663
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)