Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D03
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 100 1e-22
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 33 0.027
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 30 0.25
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 5.4
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce... 25 5.4
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 25 7.2
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 9.5
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 9.5
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 25 9.5
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 100 bits (240), Expect = 1e-22
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 10/181 (5%)
Frame = +1
Query: 25 VERELSSRRTQRCLQWCGENKSKLRKLNSTMEFNIKIQEFIELVRDDKRLDAVRYAKKHF 204
+ + + + L WC E+++ L+K NST+E +++Q FIEL++ K A+ +AK HF
Sbjct: 161 IHDSILQQELKEVLSWCSEHRAILKKNNSTLELEVRLQRFIELIKSKKLCQAIAFAKAHF 220
Query: 205 STYEEGQLEDIQHCMGMLAFPKDTEVEPYRSLLCSRRWETLIAQFRWEHARLLHPGKXXX 384
T+ +Q +LAFP+ T PY LL RWE L + F + +
Sbjct: 221 GTWANEHPARLQLAAALLAFPEFTNGSPYSLLLSDDRWEYLASLFTSNFTAVHNIPSVPL 280
Query: 385 XXXXXXXXXXXXNTPHCYSDQSKET----------GCPACQPPLSRLARSLPHAHCSHSR 534
TP CY D + + CP C P L+ L ++LP+AH + S
Sbjct: 281 LHALLAAGLSSLKTPLCYLDANDDNPLALQSQTVKQCPVCTPCLNDLGKALPYAHITQSA 340
Query: 535 L 537
+
Sbjct: 341 I 341
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 33.1 bits (72), Expect = 0.027
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 64 LQWCGENKSKLRKLNSTMEFNIKIQEFIELVRDDKRL-DAVRYAKKHFSTYEEGQLEDIQ 240
++W + + L + S++E+ ++ + K + A+RY + + + +++ L DIQ
Sbjct: 158 IEWASQCRGYLERKGSSLEYTLQKYRLVSNYLTTKDIMAAIRYCRTNMAEFQKKHLADIQ 217
Query: 241 HCMGMLAFPKDTEV 282
M L F EV
Sbjct: 218 KTMIALFFCSRNEV 231
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 29.9 bits (64), Expect = 0.25
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 343 NGTERSASPNVASTAASGTAPPQCPLERRACPYSAGCLQAA-LPRMWRNVS*RN 185
N SAS N ST SGT P R+ YS G AA L +W ++ N
Sbjct: 278 NEVNLSASTNNLSTNTSGTLKPYSLSSSRSSSYSKGVNSAASLQSIWETMNNSN 331
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 343 NGTERSASPNV--ASTAASGTAPPQC-PLERRACPYSAGCLQAALP 215
N + +S P V A++A S T+PP P R P+SA + + P
Sbjct: 349 NSSAQSPHPRVFSANSAFSTTSPPPLTPSTSRDYPFSASTISPSTP 394
>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/83 (20%), Positives = 31/83 (37%)
Frame = +1
Query: 67 QWCGENKSKLRKLNSTMEFNIKIQEFIELVRDDKRLDAVRYAKKHFSTYEEGQLEDIQHC 246
+WC ++ L+S ME I+ E + ++ + + +GQ + H
Sbjct: 88 EWCKSQDIRVIILSSGMEPFIRA--LFEQYLGKEEASSIEIVSNDINVHPDGQWNIVYHD 145
Query: 247 MGMLAFPKDTEVEPYRSLLCSRR 315
K + PY L S+R
Sbjct: 146 DSHFGHDKSLTIRPYAQLPESKR 168
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 118 EFNIKIQEFIELVRDD--KRLDAVRYAKKHFSTYEEGQLE---DIQHCMGMLAFPKDTEV 282
EF+++ +E++ + + + KR + V+ H + + DI MG L PK TE+
Sbjct: 213 EFDLEAEEYVPMPKGEVHKRKEIVQDVTLHDLDIANARPQGGQDIMSMMGQLMKPKKTEI 272
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 169 RLDAVRYAKKHFSTY 213
RL AV+YAK H+ T+
Sbjct: 82 RLKAVQYAKTHYETF 96
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 13 AAAEVERELSSRRTQRCLQWCGENKSKLRKLNSTMEFNIKIQEFIELVR 159
A A +E+ + + R RC+ W K KLR L+S + N+ + L++
Sbjct: 301 ADASLEKPMVTIR--RCIAWTQVAKLKLRILSSVVNDNMNQENKKRLIQ 347
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 180 SIQSFIITNQLYKFLYLYIEF--HSGVEF 100
++QSF I N L YL IEF H G EF
Sbjct: 293 TLQSFHIENPLIWAKYLKIEFLTHYGSEF 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,432
Number of Sequences: 5004
Number of extensions: 34177
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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