Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_D03
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347... 98 5e-21
06_03_0610 - 22715637-22716797 55 4e-08
03_01_0106 - 839585-839614,839725-840825,840901-841122 29 1.8
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 29 3.1
09_02_0442 - 9438617-9439381,9439463-9439693 28 4.1
09_02_0441 + 9433204-9433431,9433515-9434273 28 4.1
01_01_0715 - 5542648-5543219,5543352-5543544 28 4.1
08_01_0415 + 3687998-3688096,3688326-3688520,3689219-3689385,368... 28 5.5
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 7.2
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021... 27 7.2
02_04_0225 - 21063445-21063636,21063726-21063911,21064052-210641... 27 7.2
05_06_0203 + 26348360-26348458,26349584-26349645,26349808-263498... 27 9.6
>05_01_0437 +
3471154-3471447,3471664-3471858,3472619-3472741,
3473245-3473430,3473633-3473766,3473866-3474052,
3474179-3474280
Length = 406
Score = 97.9 bits (233), Expect = 5e-21
Identities = 51/176 (28%), Positives = 83/176 (47%)
Frame = +1
Query: 10 LAAAEVERELSSRRTQRCLQWCGENKSKLRKLNSTMEFNIKIQEFIELVRDDKRLDAVRY 189
L A V L ++ L WC EN+S+L+K S +EF +++QEF+ELV+ + A+ Y
Sbjct: 172 LDAKRVIDSLQNKEIAPALAWCAENRSRLKKSKSKLEFFLRLQEFVELVKAKNFMHAIAY 231
Query: 190 AKKHFSTYEEGQLEDIQHCMGMLAFPKDTEVEPYRSLLCSRRWETLIAQFRWEHARLLHP 369
A+K+ S + ++++Q L F T PY+ L +W++L+ QF+ E +L
Sbjct: 232 ARKYLSPWGATHMKELQRVTATLVFRSSTNCAPYKVLFEQNQWDSLVDQFKQEFCKLYGM 291
Query: 370 GKXXXXXXXXXXXXXXXNTPHCYSDQSKETGCPACQPPLSRLARSLPHAHCSHSRL 537
TP C+ + P P +LA LP + HS+L
Sbjct: 292 TLEPLLNIYMQAGLTALKTPFCFDGNCPKED-PLSLPGFRKLAEPLPFSKQHHSKL 346
>06_03_0610 - 22715637-22716797
Length = 386
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/106 (25%), Positives = 47/106 (44%)
Frame = +1
Query: 46 RRTQRCLQWCGENKSKLRKLNSTMEFNIKIQEFIELVRDDKRLDAVRYAKKHFSTYEEGQ 225
R Q L W +N +L + S +E + +F+E++ R +A++YA+ H +
Sbjct: 164 RNLQPALSWAAKNHDQLLQNGSMLELKLHQLQFVEILTKGSRDEALKYARTHLVPFASLH 223
Query: 226 LEDIQHCMGMLAFPKDTEVEPYRSLLCSRRWETLIAQFRWEHARLL 363
+IQ M L + + PY + S WE L + + LL
Sbjct: 224 KAEIQKLMACLLWADRLDQSPYAEFMSSTHWEKLAEELTHQFCSLL 269
>03_01_0106 - 839585-839614,839725-840825,840901-841122
Length = 450
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 112 TMEFNIKIQEFIELVRDDKRLDAVRYAKKHF 204
T FNI I+ + DK + ++Y KKHF
Sbjct: 267 TQTFNIMIKSYGNAKMHDKMMSVLKYMKKHF 297
>01_06_0895 -
32804433-32804744,32804948-32805163,32805301-32805642,
32805778-32806020,32806130-32806582,32806898-32807113,
32808360-32808432,32808750-32808790,32809027-32809118,
32809222-32809333,32810003-32810078,32810154-32810301,
32811195-32811336,32812120-32812196,32813568-32813619
Length = 864
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 115 MEFNIKIQEFIELVRDDKRLDAVRYAKKHFSTYEE--GQLEDIQHCMGMLAFPKDTEVEP 288
+ F++ FIELVR K +A+ + +K + + + +E ++ M +LA+ ++ E P
Sbjct: 122 LHFDLLSLHFIELVRSRKCTEALEFGQKKLTPFGKVPKYVEKLEDFMALLAY-EEPEKSP 180
Query: 289 YRSLL 303
LL
Sbjct: 181 MFHLL 185
>09_02_0442 - 9438617-9439381,9439463-9439693
Length = 331
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 340 GTERSASPNVASTAASGTAPPQCPLERRACPYSAGC 233
GTE++ASPN++ A + LERR CP C
Sbjct: 89 GTEKTASPNLSVKGYDLIADIKAELERR-CPGVVSC 123
>09_02_0441 + 9433204-9433431,9433515-9434273
Length = 328
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 340 GTERSASPNVASTAASGTAPPQCPLERRACPYSAGC 233
GTE++ASPN++ A + LERR CP C
Sbjct: 88 GTEKTASPNLSVKGYDLIADIKAELERR-CPGVVSC 122
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 343 NGTERSASPNVASTAASGTAPPQCP 269
NGT R+ SP V + A +G+ PP P
Sbjct: 169 NGTARAPSPPVPAPAPAGSPPPPPP 193
>08_01_0415 +
3687998-3688096,3688326-3688520,3689219-3689385,
3689459-3689509,3689576-3689657,3689764-3689832,
3689939-3690109
Length = 277
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 427 PHCYSDQSKETGCPACQPPLSRLAR 501
P + +Q E GCP C P R A+
Sbjct: 215 PKPFEEQPDEYGCPQCNAPKKRFAK 239
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 8 AWPRRRSNAN*VHVARSAACSGVAKTNPSYANSTP 112
AWPR R +HV +AA +G + + S P
Sbjct: 229 AWPRHRDRTQALHVFGAAAAAGQPSASSLVSRSRP 263
>03_06_0583 +
34901636-34901721,34901805-34901902,34902029-34902167,
34902262-34902290,34902406-34902502,34902593-34902648,
34902759-34902866,34902988-34903044,34905585-34905679,
34905822-34905998,34906086-34906189,34906595-34906664,
34906774-34906833
Length = 391
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 124 NIKIQEFIELVRDDKRLDAVRYAKKHFSTYEEGQLEDIQH 243
+I++QE L+RD +RL RY + F+++ E ++ H
Sbjct: 327 SIQLQELGPLLRDYQRLILRRYLENSFTSFYEKEVHRFFH 366
>02_04_0225 -
21063445-21063636,21063726-21063911,21064052-21064138,
21064589-21064648,21064984-21065052,21065684-21065837,
21066127-21066203,21066634-21066679,21067167-21067253,
21067653-21067799,21069042-21069304
Length = 455
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 121 FNIKIQEFIELVRDDKRLDAVRYAKKHFSTYEEGQLED--IQHCMGMLAFPKDTE 279
F + Q FIE + + DAV+YA+ + + + + D ++ + +LA+ K E
Sbjct: 289 FLLHSQRFIEFIGAGQLEDAVKYARSNLANFLTHKAFDGLLKESVALLAYEKPAE 343
>05_06_0203 +
26348360-26348458,26349584-26349645,26349808-26349895,
26349985-26350085,26350130-26350223,26350323-26350730,
26351090-26351521,26351612-26351755,26351824-26351940,
26352842-26352949
Length = 550
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 340 GTERSASPNVASTAASGTAPPQCPLERRACPYSAGCLQAALPRMWRNVS*RNVQHPI 170
GT S P V +T++ G A P+ PY+A A P++ N+Q+P+
Sbjct: 455 GTLASQRPAVDTTSSRGKALPEDIFTMSYHPYAANWDWRANPQLNMGYGQYNMQYPV 511
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,693
Number of Sequences: 37544
Number of extensions: 246966
Number of successful extensions: 883
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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