Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D03
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82080-2|CAB04951.1|  428|Caenorhabditis elegans Hypothetical pr...    76   2e-14
U29488-7|AAA68771.1|  221|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    27   6.5  
Z73897-3|CAE18053.1|  178|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U28944-11|AAA68370.2|  340|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z82080-2|CAB04951.1|  428|Caenorhabditis elegans Hypothetical
           protein W09G3.2 protein.
          Length = 428

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 4/175 (2%)
 Frame = +1

Query: 25  VERELSSRRTQRCLQWCGENKSKLRKLNSTMEFNIKIQEFIELVRDDKRLDAVRYAKKHF 204
           V++ L     Q CL WC  +  KLRKL S +E   + QE + L+      +AV Y KK+ 
Sbjct: 194 VQQALLDGNIQPCLAWCDRHHRKLRKLESRIELVARQQEAVTLIELGNIPEAVAYVKKYI 253

Query: 205 STYEEGQL-EDIQHCMGMLAFPKDTEVEPYRSLLCSRRWETLIAQFRWEHARLLHPGKXX 381
           +   +G+  ED++  MG +A   +        L  + R++   A F  E  R+       
Sbjct: 254 APIAKGKFTEDLKKTMGAIACTLEQSRLRNPELHAADRYQKCAALFIEEAHRIFEIHGNT 313

Query: 382 XXXXXXXXXXXXXNTPHCYSDQS---KETGCPACQPPLSRLARSLPHAHCSHSRL 537
                         TP C++D+     +  C  C+P +  +A +LP++H ++SR+
Sbjct: 314 ALATLIQYGLATQKTPSCHNDEKTPLDKQKCIVCRPDVWPIAENLPYSHVANSRI 368


>U29488-7|AAA68771.1|  221|Caenorhabditis elegans Hypothetical
           protein C56C10.3 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 85  KSKLRKLNSTMEFNIKIQEFIELVRDDKRLDAVRYAKKH 201
           +  ++KL  T E   K QEF+E    D++ +AV+Y  K+
Sbjct: 20  QESIQKLRETEEMLEKKQEFLEKKVIDEKQNAVKYGTKN 58


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 472  CQPPLSRLARSLPHAHCSH 528
            C P +S  +R+LP  HCSH
Sbjct: 1531 CVPMISSRSRNLPTIHCSH 1549


>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 287 GSTSVSFGKASMPIQCWMSSSC--PSSYVEKCFLA*RTASNLLSSRTNSINSCIFILNSI 114
           GS  V  G  +  + C +++ C  P S +E+CF          +SR     + +F+LN I
Sbjct: 93  GSNVVFNGAMTFSVYCIVAAMCSLPFSILERCFATRYLKDYEANSRAYISYALVFLLNFI 152


>Z73897-3|CAE18053.1|  178|Caenorhabditis elegans Hypothetical
           protein ZK617.4 protein.
          Length = 178

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -2

Query: 343 NGTERSASPNVASTAASGTAPPQCPLE 263
           +G++  ASP+ +++++S   PP+ PLE
Sbjct: 20  DGSDHGASPSSSTSSSSRRLPPRPPLE 46


>U28944-11|AAA68370.2|  340|Caenorhabditis elegans Hypothetical
           protein C18A3.3 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +1

Query: 64  LQWCGENKSKLRKLNSTMEFNIKIQEFIELVRDDKRLDAVRYAKKHFSTYEEGQLEDI 237
           +Q   E +   R++    +F +K+Q+ +   ++ ++ +     KKH    ++ QLED+
Sbjct: 182 IQEMKERQEAFRRIREEKKFAVKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQ-QLEDM 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,907
Number of Sequences: 27780
Number of extensions: 196843
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)