Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D02
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    31   0.071
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   2.0  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   3.5  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   3.5  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   4.6  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   4.6  
SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24 ...    25   6.1  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   8.1  

>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 31.5 bits (68), Expect = 0.071
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +2

Query: 155 DKARAVPSIILPQGYIQTHRQTDRQEFKPADGAVNLPEPRRTTPSSIFNNCIIMISDLSR 334
           + A  +  +IL +  +   RQ  R+   P +  VN+P+P +T PS+  N    + S  S 
Sbjct: 338 EDANELRRVILDE--VLNFRQKVRRRSHPTNPTVNIPQPAQTVPSN-DNGSFNVSSSSSS 394

Query: 335 ETSEWRR 355
           +TS  +R
Sbjct: 395 QTSNKKR 401


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -1

Query: 474 CIFININLTGLMNYARVYVSLCVYGCVFIVYLCGFFFKIRRRHSLVSLDKSLIIIIQLLK 295
           CI  N + T L++   +  SL ++    +  LC F+ K+R    +  +DK+    I +LK
Sbjct: 106 CITFNSSGTLLLS-GSIDRSLQIWDITSLSCLCKFYTKLRFIWGVKFIDKNAFYHISILK 164

Query: 294 MEDG 283
            + G
Sbjct: 165 HKPG 168


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 260 LPEPRRTTPSSIFNNCI 310
           LP PR ++PSS F  C+
Sbjct: 14  LPSPRTSSPSSNFKTCV 30


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 260  LPEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILKKNPHKYTIKTHPYT 409
            L +P R  PS++ +N ++++  L    ++W    + +     TI  H YT
Sbjct: 1234 LRKPNRLVPSNVKSNILVLLCKLLPTNTKWLHASISQTNDFDTI-MHLYT 1282


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 238 FEFLSVCLSVCLYVSLW*YY*WD 170
           F FLS+ LSVCL   LW  Y WD
Sbjct: 251 FTFLSIGLSVCL--ELW--YLWD 269


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 363  KIRRRHSLVSLDKSLIIIIQLLKMEDGVVRRGSGKLTAPSAGL 235
            ++R      ++D+ +  +  L K+EDG+  +  G   A  AGL
Sbjct: 1151 QVRLMQMAAAVDEKIRRVTFLYKLEDGICPKSYGMNVASMAGL 1193


>SPAC1782.04 |cox24||mitochondrial mRNA processing protein Cox24
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 242 ADGAVNLPEPRRTTPSSIFNNCIIMISDLSRE-TSEWRRRILKKNPHKY 385
           A G+V   +P R +       C  +IS    + TS  R+R LK N HK+
Sbjct: 111 ASGSVTQTQPARISTQVWEQICDKLISITPLDLTSVKRKRKLKMNKHKF 159


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = +2

Query: 197 YIQTHRQTDRQEFKPADGAVNLPEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILK 367
           Y++ + +T        +   ++ +P +  P+  F+NC I+  + S+   + R+  LK
Sbjct: 556 YLKVNSETSLPTGDIVEWQNDITKPTKLDPNISFDNCFIVDREASKFCLDTRKYSLK 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,923
Number of Sequences: 5004
Number of extensions: 34275
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)