Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D02
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451...    32   0.28 
01_06_1078 + 34378985-34380064,34380155-34380283,34380362-343804...    29   2.0  
12_01_0385 - 3020078-3020132,3020510-3020577                           29   2.6  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    27   6.1  
12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,570...    27   8.1  

>01_06_0153 -
           27044553-27044669,27044842-27044964,27045066-27045161,
           27045323-27045370,27046360-27046458,27046554-27046592,
           27047032-27047133,27047225-27047347,27047535-27047783
          Length = 331

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 302 NCIIMISDLSRETSEWRRRILKKNP 376
           N ++ ++DL RET +W R+IL+ +P
Sbjct: 248 NVVVPLADLERETVKWCRKILRNSP 272


>01_06_1078 +
           34378985-34380064,34380155-34380283,34380362-34380430,
           34380536-34380588,34381309-34381421,34381565-34382132,
           34382520-34382580,34382624-34382665
          Length = 704

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +2

Query: 11  QSWLY--CPRCKMMFLDQMKKFVEWLQN 88
           +SWLY  CP C+ MFLD  + F+  L+N
Sbjct: 94  KSWLYWVCPNCERMFLDS-EGFLLHLEN 120


>12_01_0385 - 3020078-3020132,3020510-3020577
          Length = 40

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 438 NYARVYVSLCVYGCVFIVYLCGFFFKI 358
           NYA VY    V G +FI+ +CG F +I
Sbjct: 11  NYAVVYAFEGVVGDIFIMMICGHFCEI 37


>04_04_1193 +
           31634043-31634349,31634685-31634847,31635048-31636622,
           31636653-31637541,31639401-31641266
          Length = 1599

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 316 HYNTIIKNGGWRRAAGFG*INSAVRR-FEFLSVCLSVC-LYVSLW 188
           H+N I+KN  W+     G I  +++R ++ L   L  C LY SL+
Sbjct: 477 HWNNILKNEDWKSMQLSGGIMPSLKRSYDMLPYQLKQCFLYCSLF 521


>12_01_0671 - 5702051-5702159,5702493-5703216,5703910-5704476,
            5704654-5704873,5705303-5707207
          Length = 1174

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 412  VCVRMCFYCVFMWIFF*NPP--TPFARFSRQITNHYNTIIK 296
            VCVR C  CV  +I F +    +   RF   ITN   T+++
Sbjct: 891  VCVRQCEGCVLAFIAFEDSSIRSRAERFLSSITNSIETVLR 931


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,784,339
Number of Sequences: 37544
Number of extensions: 224668
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)