Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_D02
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    31   0.59 
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    31   0.59 
L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protei...    30   1.0  
L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protei...    30   1.0  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL132860-24|CAB60506.1|  767|Caenorhabditis elegans Hypothetical...    28   4.2  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    27   7.3  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    27   7.3  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    27   7.3  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    27   7.3  
Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine re...    27   9.7  

>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 456 NLTGLMNYARVYVSLCVYGCVFIVYLCGFFFKIRRRHSLVSLDKSLIIIIQL 301
           +LT  M Y  + +S+C      +V +C  FFKI+    + +L  +LI+++ L
Sbjct: 200 DLTAHMGYILI-ISMCFMFFGLVVVICSMFFKIKFLMMVYALGGALIMMLYL 250


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 456 NLTGLMNYARVYVSLCVYGCVFIVYLCGFFFKIRRRHSLVSLDKSLIIIIQL 301
           +LT  M Y  + +S+C      +V +C  FFKI+    + +L  +LI+++ L
Sbjct: 200 DLTAHMGYILI-ISMCFMFFGLVVVICSMFFKIKFLMMVYALGGALIMMLYL 250


>L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protein
           1.2, isoform b protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = +2

Query: 170 VPSIILPQGYIQTHRQTDRQEFK----PADGAVNLPEPRRTTPSSIFNNCIIMISDLSRE 337
           V S + P G     ++ D + +K    P   + + P  R +    + N  ++    + + 
Sbjct: 121 VSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELMEQR 180

Query: 338 TSEWRRRILKKNPHKYTIKTHPYTHRETYTRA 433
             E  ++ + +N H+ +  +HP  H  T + A
Sbjct: 181 MKEAAQQKIHRNGHRPSSSSHPLHHHSTSSSA 212


>L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protein
           1.2, isoform a protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = +2

Query: 170 VPSIILPQGYIQTHRQTDRQEFK----PADGAVNLPEPRRTTPSSIFNNCIIMISDLSRE 337
           V S + P G     ++ D + +K    P   + + P  R +    + N  ++    + + 
Sbjct: 295 VSSTVTPSGSSSNLKKIDLESYKGRPKPLSNSSDSPSTRPSFLPDVKNQKVVEQELMEQR 354

Query: 338 TSEWRRRILKKNPHKYTIKTHPYTHRETYTRA 433
             E  ++ + +N H+ +  +HP  H  T + A
Sbjct: 355 MKEAAQQKIHRNGHRPSSSSHPLHHHSTSSSA 386


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 474 CIFININLTGLMNYARVYVSLCVYGCVFIVYLCGFFFKIRRRHSLV 337
           CI    ++  L  Y+ V++++C +GC F        F +R+   +V
Sbjct: 236 CITWAYDVFALCEYSGVFLNICFHGCAFFDIRYKVTFSVRKIEDVV 281


>AL132860-24|CAB60506.1|  767|Caenorhabditis elegans Hypothetical
           protein Y56A3A.30 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 137 SAASETDKARAVPSIILPQGYIQTHRQ-TDRQEFKPADGAVNLPEPRRTTP 286
           S    TD+A + P    P+      R+  D  E   ADG   +P+P+R  P
Sbjct: 617 STVKPTDEAHSPPIQAQPKKKATPRRKKADDVETVVADGTATIPKPKRKRP 667


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 263  PEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILK 367
            PEP+   P S+FNN +  +S    ++     RI K
Sbjct: 1574 PEPQHRRPHSLFNNLVHRLSGAGSKSPTEHERIEK 1608


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 263  PEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILK 367
            PEP+   P S+FNN +  +S    ++     RI K
Sbjct: 1574 PEPQHRRPHSLFNNLVHRLSGAGSKSPTEHERIEK 1608


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 263  PEPRRTTPSSIFNNCIIMISDLSRETSEWRRRILK 367
            PEP+   P S+FNN +  +S    ++     RI K
Sbjct: 1574 PEPQHRRPHSLFNNLVHRLSGAGSKSPTEHERIEK 1608


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 11  QSWLYCPRCKMMFLDQMKKFVEWL 82
           +SWL  P C    L+Q +K ++WL
Sbjct: 612 RSWLLQPTCDPKKLEQRQKAIKWL 635


>Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical
           protein F43G9.10 protein.
          Length = 466

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
 Frame = +3

Query: 138 VQRVRLTRH----APSHQ*YYHKDTYKHTDRQTDRNSNRR 245
           +Q+V+++R+    AP +   Y  D+   +DR+TDR+ +RR
Sbjct: 40  MQKVKVSRYVAGKAPEYARNYDSDS-SESDRETDRDDDRR 78


>AC024881-3|AAK71413.1|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein6 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 477 YCIFININLTGLMNYARVYVSLCVYGCVFIVYLCGFFFKIRRRHSLVSLDKSLIIIIQLL 298
           Y     IN   +++Y  VY+   V+G   ++YL     K++ + S++   + L  II L+
Sbjct: 2   YGTLARINQLVIVSYKIVYLFFGVFGNASLIYLIARRKKLQTKSSILQAIQCLCHIICLI 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,200,480
Number of Sequences: 27780
Number of extensions: 199667
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)