Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C24
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    46   3e-06
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   1.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    27   1.3  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   2.3  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    26   2.3  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    25   4.0  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    25   5.2  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    25   6.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 45.6 bits (103), Expect = 3e-06
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 226 KPEELAAAGFFYTGHGDK---TKCFYCDGGLKDWENDDVPWEQHARWFDRCAY 375
           +P  +AA+GF Y    D      C YCD  L DWE DD P+ +H R    C +
Sbjct: 140 EPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192



 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
 Frame = +1

Query: 184 RLASF--KDWPRCMGQKPEELAAAGFFYTGHG--------DKTKCFYCDGGLKDWENDDV 333
           RL +F  K WPR     PE LA  GF+Y            D   C+ C     DWE+DD 
Sbjct: 25  RLDTFQKKKWPRAK-PTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDD 83

Query: 334 PWEQHARWFDRCAYVQLVKGRD 399
           P ++H      C +  ++  ++
Sbjct: 84  PLKEHITHSPSCPWAYILSSKN 105


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 292 YCDGGLKDWENDDVPWEQHARWFDRCAYVQLVKGRDYIQKVISEAYAI 435
           +C G L DW           R  D+ A VQL K +  I++ + E+Y+I
Sbjct: 693 FCLGNLHDWNTSSSVDVGELRGIDKLALVQLDKFQTEIRE-LYESYSI 739


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 362 SNQRACCSQGTSSFSQSLRPPSQ*KHLVLSPWPV 261
           S  +  CS+ T   SQ++   S+ KH+V+ PW +
Sbjct: 585 STYKLSCSEMTPQNSQAVIKNSE-KHIVMKPWDI 617


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +1

Query: 202 DWPRCMGQKPEELAAAGFFYTGHGDKTKCFYCDGGLKDWENDDVPWEQHARWFDRCAYV 378
           D PR +  K   + A  F Y    D   C +CD GL  W       E  A   ++C  V
Sbjct: 223 DIPRHIKFKGSVIPATSFIY----DFNACVFCDDGLVVWTRYVKKIEMKAVSIEQCLRV 277


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 157 HPQYATEVARLASFKDWPRCMGQKP 231
           HP Y T +   A   +W R MG  P
Sbjct: 275 HPDYFTALVMQAIIGNWDRAMGASP 299


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 80  SVGTLVEAAFFRKNGHWGAHL 18
           S   LV    F+K+GHW  H+
Sbjct: 599 SCSILVAQTAFKKDGHWHTHI 619


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 64  TSVPTDGSTGGRDECGARA 120
           TS   DG TGG D+ G RA
Sbjct: 332 TSPEYDGETGGMDDVGFRA 350


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 107 HSSRPPVLPSVGTLVEAAFFRKNGHWGAHLL 15
           +++R P + +  T+++   FR  GH GA+L+
Sbjct: 104 YTNRKPRVVTALTMLKQHLFRYQGHIGAYLV 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,213
Number of Sequences: 5004
Number of extensions: 47119
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)