Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C24
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396... 33 0.078
02_05_0256 + 27201483-27202499,27203297-27203375,27204617-272049... 33 0.078
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 31 0.31
04_04_1251 + 32083164-32083284,32083448-32083614,32083719-320837... 31 0.55
02_05_0380 + 28472494-28473090 30 0.96
01_01_1064 + 8393519-8394475 30 0.96
10_08_0802 + 20680685-20681059,20681218-20681353,20682047-206821... 29 1.7
03_01_0606 - 4461646-4462623 29 1.7
08_01_0927 - 9123473-9123589,9124534-9124616,9125177-9125252,912... 29 2.2
06_03_0383 - 20154045-20154712,20154969-20155122,20155780-201558... 29 2.2
03_06_0297 - 32924162-32924605 29 2.2
02_04_0242 + 21210062-21210541 29 2.2
10_08_1033 - 22444757-22444862,22444965-22445542 28 3.9
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 28 3.9
07_01_1002 + 8463187-8463585 28 3.9
03_02_0777 - 11116217-11116812,11117176-11117299 28 3.9
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 28 3.9
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 27 5.1
11_01_0218 - 1704459-1704629,1704895-1705119,1705120-1705277,170... 27 5.1
10_08_0610 - 19209484-19210068 27 5.1
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580... 27 5.1
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792 27 5.1
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 27 5.1
02_01_0680 + 5054306-5056411,5057200-5057243,5057549-5057664,505... 27 5.1
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 27 6.8
03_02_0311 - 7320832-7321554 27 6.8
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 27 6.8
02_05_0255 - 27184306-27184914,27185009-27185272 27 6.8
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107... 27 9.0
05_02_0093 + 6530930-6531048,6531077-6531377 27 9.0
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 27 9.0
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 27 9.0
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 27 9.0
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 27 9.0
01_06_0084 + 26286463-26288259 27 9.0
>07_03_1174 +
24538522-24538682,24539229-24539430,24539529-24539675,
24539832-24539944,24540580-24540791,24541194-24541258,
24541581-24541751,24542543-24542887,24542980-24543173,
24543292-24543448,24543946-24544010,24544166-24544331
Length = 665
Score = 33.5 bits (73), Expect = 0.078
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 250 GFFYTGHGDKTKCFYCDGGLKDWENDDVPWEQHARWFDRCAYVQLVKGRDYIQKVISEAY 429
G FY GD + CF +G K + N +VPWE +C + D++ ++EA+
Sbjct: 212 GSFYPAEGDASYCFIGEGDGKGY-NINVPWEH-----GKCGDADYIAAWDHVLLPVAEAF 265
>02_05_0256 +
27201483-27202499,27203297-27203375,27204617-27204946,
27205029-27205198
Length = 531
Score = 33.5 bits (73), Expect = 0.078
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -1
Query: 248 AAASSSGFCPIQRGQSLKLASRATSVAYCGCTGPGILTGSRAVARAPHSSRPPVLPSVGT 69
+A + ++R +LAS A ++ G P I + +RAVA P P LP+ GT
Sbjct: 127 SALQAEARAALRREDPARLASAARALRRSGRDLPRIASSARAVAAKPPPPPPAGLPADGT 186
Query: 68 LVEAA 54
+ AA
Sbjct: 187 ALAAA 191
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 31.5 bits (68), Expect = 0.31
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 49 KNAASTSVPTDGSTGGRDECGARA-TAREPVRMPGPVHPQYATEVARLASFKDWPRCMGQ 225
K AS +V +GS E G A + EPV P P AT R + PR G+
Sbjct: 1695 KGTASIAV-LEGSNA--KEVGIPAHSVHEPVSSSAPHPPTPATSRGRKTQAGETPRRRGR 1751
Query: 226 KPEELAAA 249
KP+ LAA+
Sbjct: 1752 KPKSLAAS 1759
>04_04_1251 +
32083164-32083284,32083448-32083614,32083719-32083721,
32084323-32084532,32084818-32084977,32085080-32085314,
32085405-32085555
Length = 348
Score = 30.7 bits (66), Expect = 0.55
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 106 CGARATAREPVRMPGPVHPQYATEVARLASFKDWPRCMGQKPEELAAAGF 255
CG AT + R +P+Y +VA L + PR + E+LA GF
Sbjct: 273 CGLSATMLQLARFLAAKYPEYNVDVAALGDLPEKPR-IRLSSEKLAGEGF 321
>02_05_0380 + 28472494-28473090
Length = 198
Score = 29.9 bits (64), Expect = 0.96
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 269 WPV*KNPAAASSSGFCP-IQRGQSLKLASRATSVAYCGCTGPGILTGSRAVARA 111
W K+P A S G CP R + L+L V C CT + S A A
Sbjct: 19 WRCRKHPVARSGGGVCPHCLRDRLLRLCPNCAHVRPCPCTCASPSSSSSASGEA 72
>01_01_1064 + 8393519-8394475
Length = 318
Score = 29.9 bits (64), Expect = 0.96
Identities = 19/53 (35%), Positives = 22/53 (41%)
Frame = -1
Query: 248 AAASSSGFCPIQRGQSLKLASRATSVAYCGCTGPGILTGSRAVARAPHSSRPP 90
AA SSGF P S + AT C C P L +R + SS PP
Sbjct: 228 AAERSSGFWPPSIWPSSRSKKTATLALPCPCPCPPSLQPARRSTSSERSSAPP 280
>10_08_0802 +
20680685-20681059,20681218-20681353,20682047-20682180,
20682722-20682827,20683227-20683312,20683648-20683836,
20684349-20684522,20684638-20684751,20684887-20685141
Length = 522
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -1
Query: 161 GCTGPGILTGSRAVARAPHSSRPPVLPSVGTLVEAAFFRKNGHWGA 24
GC G + GS A + P +RPP P F N H A
Sbjct: 2 GCCGSSLRVGSHAPEKPPRRARPPPPPPQPHHPRRPSFTLNAHQAA 47
>03_01_0606 - 4461646-4462623
Length = 325
Score = 29.1 bits (62), Expect = 1.7
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = -1
Query: 284 LVLSPWPV*KNPAAASSSGFCPIQRGQSLKLASRATSVAYCGCTGPGILTG--SRAVARA 111
++ P P P+ SS F P+ G V +G G+L G SRAV
Sbjct: 62 MIFHPCPSYGLPSWPSSVDFMPLGSGSGSGRGGEKNDVVAVDYSGSGVLYGAASRAVTIL 121
Query: 110 PHSSRPPVLP 81
P + P P
Sbjct: 122 PPMNTPKAFP 131
>08_01_0927 -
9123473-9123589,9124534-9124616,9125177-9125252,
9125641-9125740,9125996-9126064,9126122-9126207,
9126293-9126430,9126688-9126810,9128130-9129719,
9129929-9130402
Length = 951
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 110 PHSSRPPVLPSVGTLVEAAFFRKNG 36
P SS PP P VG L+E+ FR G
Sbjct: 21 PRSSTPPPQPLVGGLIESLSFRSCG 45
>06_03_0383 -
20154045-20154712,20154969-20155122,20155780-20155896,
20157395-20157466
Length = 336
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 137 TGSRAVARAPHSSRPPVLPSVGTLVEAAFFRKN 39
T SRA A A H+SRPP P++ +EAA N
Sbjct: 294 TSSRASASA-HASRPPAPPTMEPAMEAASLGPN 325
>03_06_0297 - 32924162-32924605
Length = 147
Score = 28.7 bits (61), Expect = 2.2
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -1
Query: 275 SPWPV*KNPAAASSSGFCPIQRGQSLKLASRATSVAY-CGCTGPGILTGS-RAVARAPHS 102
+P P+ + AAA+++ C + R Q A+R +V CG T P + G+ R++ P
Sbjct: 6 TPLPLLRGAAAAAAARSC-LHRPQVGAAAARRAAVGVRCGGTPPAEVPGTDRSLEELPSI 64
Query: 101 SRPP 90
PP
Sbjct: 65 DTPP 68
>02_04_0242 + 21210062-21210541
Length = 159
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 46 RKNAASTSVPTDGSTGGRDECGARATAREPVRMPGP 153
R AA+T+ G G D+ R R P R+P P
Sbjct: 105 RPPAAATTTARGGGGGDDDDGAGRRRQRRPARLPSP 140
>10_08_1033 - 22444757-22444862,22444965-22445542
Length = 227
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 19 RWAPQCPFLRKNAASTSVPTDGSTGGRDECGARATAREP 135
R P+ P + +N +G GG +EC ARA P
Sbjct: 117 RVEPENPLVLRNYGRYLQEVEGDLGGAEECYARALLASP 155
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 191 ASRATSVAYCGCTGPG-ILTGSRAVARAPHSSR 96
A R S + CGC G G +LTGSR+ +SR
Sbjct: 153 APRVGSGSVCGCGGGGGLLTGSRSTGSVFSASR 185
>07_01_1002 + 8463187-8463585
Length = 132
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 164 CGCTGPGI-LTGSRAVARAPHSSRPPVLPSVGTLV 63
CGC LT +R+VARA S PP P+ T V
Sbjct: 56 CGCAATNRNLTMARSVARAATPSAPPSSPTKTTQV 90
>03_02_0777 - 11116217-11116812,11117176-11117299
Length = 239
Score = 27.9 bits (59), Expect = 3.9
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +1
Query: 58 ASTSVPTDGSTGGRDECGARATAREPVRMPGPVHPQYATEVARLASFKDWPRCM--GQKP 231
AST+ P G R G R+ RE +PGP Q R A+ P C G+ P
Sbjct: 28 ASTTSPPRGEEAER---GGRSPGREAATLPGPDCYQGGRSPRREAATSPGPDCYQGGRSP 84
Query: 232 EELAA 246
AA
Sbjct: 85 GRKAA 89
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 111 SACNCT*TCKNARPRTPAIRYRSCPTRQFQRLASLYGAET 230
S CT +C+ R R A+R R+ R+ + +A AET
Sbjct: 29 SGSGCT-SCREVRRRAAAVRVRAAAPRRVEAVAMESAAET 67
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 362 SNQRACCSQGTSSFSQSLRP 303
S A CS GT S SQS++P
Sbjct: 833 SRSEAACSHGTQSHSQSMQP 852
>11_01_0218 -
1704459-1704629,1704895-1705119,1705120-1705277,
1705378-1705463,1705574-1705823,1706220-1707246
Length = 638
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 362 SNQRACCSQGTSSFSQSLRP 303
S A CS GT S SQS++P
Sbjct: 220 SRSEAACSHGTQSHSQSMQP 239
>10_08_0610 - 19209484-19210068
Length = 194
Score = 27.5 bits (58), Expect = 5.1
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Frame = +1
Query: 10 DHKRWAPQCPFLRKNAASTSVPTDGST--GGRDECGARATAREPVRMPGPVHPQYATE-- 177
D W P R + + +G GG E + R PG YA E
Sbjct: 87 DRAAWGPDADAFRPSRFAAGAAAEGLDFRGGCFEFLPFGSGRRSC--PGMALGLYALELA 144
Query: 178 VARLASFKDWPRCMGQKPEELAAAGFF 258
VARLA +W G KP EL + F
Sbjct: 145 VARLAHGFNWSLPDGMKPSELDMSDIF 171
>08_02_1312 + 26055372-26056056,26056935-26057187,26057277-26058081,
26058828-26058952,26059081-26059165,26059473-26059626,
26059724-26059761,26059842-26060109,26060257-26060380,
26060508-26060868,26061904-26062272,26062528-26062609,
26063042-26063193
Length = 1166
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 377 TYAHRSNQRACCSQGTSSFSQSLRPPS 297
T HR N R CCS T S S + PPS
Sbjct: 1027 TITHRINVRHCCS--TISASPPINPPS 1051
>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
Length = 622
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 61 STSVPTDGSTGGRDECGARATAREPVR 141
++SVP GS+G CGARA+ P +
Sbjct: 571 ASSVPFSGSSGWPSICGARASDGSPCK 597
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 161 RNTLPKLPDSPVSKTGLAV----WGRNRKNWRQPDSFTQATVTKLNASIATVVL 310
R L K+P S S++ ++ W RNRK+W S T +N ++ ++ L
Sbjct: 431 RTVLLKVPSSNSSQSMISTSSNKWKRNRKHWVLGSSLILGTSILVNFALISIFL 484
>02_01_0680 +
5054306-5056411,5057200-5057243,5057549-5057664,
5057942-5058036
Length = 786
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 53 MQLLPVYPRMEVQVAVMNAERVQLHVNL*ECQAPY 157
++ +P+ P + ++++A RV H++L +C A +
Sbjct: 532 VKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEH 566
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 157 VRGLAFLQVHVQLHALRIHHGHLYFH 80
+R L ++LHA+R H H+Y H
Sbjct: 1511 LRSLMTAIEELELHAIRTGHSHMYLH 1536
>03_02_0311 - 7320832-7321554
Length = 240
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 55 AASTSVPTDGSTGGRDECGARATAREPVRM 144
A++T T S G R A ATAREP R+
Sbjct: 50 ASATESSTTDSGGTRPAATATATAREPARV 79
>02_05_0877 +
32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 327 RCSLGTARTLVRPVCIRTTR 386
RCS GT RT P+C R ++
Sbjct: 430 RCSHGTCRTPFHPICARESK 449
>02_05_0255 - 27184306-27184914,27185009-27185272
Length = 290
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 118 ATAREPVRMPGPVHPQYATEVARLASFKDWPRCMGQKPEELAAAGFFYTGHGDKTK 285
A+ P P P HP ATE K+ +G+ E+L ++ G G++ K
Sbjct: 225 ASPAAPATTPAPAHPPPATEEVSSPDGKEKKGILGKIMEKLPG---YHKGSGEEDK 277
>08_01_0136 -
1077800-1077811,1077929-1078046,1079410-1079549,
1079627-1080313
Length = 318
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +1
Query: 25 APQCPFLRKNAASTSVPTDGSTGGRDECGARATAREPVRMPGPVHPQYATEVARLASFKD 204
A + P L + S P DG GG DE +P P +HP+ +T A S D
Sbjct: 45 AVRSPELVPKDEAPSSPEDGGDGGEDE------EEKPQMEPFALHPEPSTLFAAAPSLTD 98
>05_02_0093 + 6530930-6531048,6531077-6531377
Length = 139
Score = 26.6 bits (56), Expect = 9.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -1
Query: 245 AASSSGFCPIQRGQSLKLASRATSVAYCGCTGPGILTG-SRAVARAPHSSRPPVLPSVGT 69
A+S S P +R ++L L R + G G G++ +RA+A P PP PS+ T
Sbjct: 44 ASSGSAAFP-KRRRALSLIGRRLQYPHQGRDGGGLVAAFARAIALPPLQP-PPRKPSLAT 101
Query: 68 L 66
+
Sbjct: 102 I 102
>05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 26.6 bits (56), Expect = 9.0
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = +2
Query: 23 GLPSVRFYEKMQLLPVYPRMEVQVAVMNAERVQLHVN------L*ECQAPYTRNTLPKLP 184
GL +R K+ ++P P + N + + LH + L +CQ T + LP L
Sbjct: 1302 GLKDLRM--KLSIIPQEPTLFRGSVRSNVDPLGLHTDEDIWEALNKCQLKKTISALPGLL 1359
Query: 185 DSPVSKTG 208
+SPVS G
Sbjct: 1360 ESPVSDDG 1367
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 28 PQCPF-LRKNAASTSVPTDGSTGGRDECG 111
P+ P + K AA++S+ TDG+ G CG
Sbjct: 374 PRTPTPINKKAAASSISTDGANCGTKGCG 402
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 58 ASTSVPTDGSTGGRDECGARATAREPVRMPGPVHPQY 168
A T+ PT G R C A A A P P P HP +
Sbjct: 496 ALTAPPTSSPPGSRLRCTASARATSP---PPPRHPPH 529
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 26.6 bits (56), Expect = 9.0
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -1
Query: 353 RACCSQGTSSFSQSLRPPSQ*KHLVL---SPWPV*KNPAAASSSGFCPIQRGQSLKLASR 183
R CCS +S F+Q L + + L SP P P + SSS + R +L R
Sbjct: 159 RGCCST-SSDFAQKLLLDLRRRRERLGFNSPAP----PQSTSSSNAAALLRCPTLPRKGR 213
Query: 182 ATSVAYCGCTGP 147
A S + CT P
Sbjct: 214 AASNTFSDCTPP 225
>01_06_0084 + 26286463-26288259
Length = 598
Score = 26.6 bits (56), Expect = 9.0
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -1
Query: 266 PV*KNPAAASS--SGFCPIQRGQSLKLASRATSVAYCGCTGPGILTGSRAVARAPHSSRP 93
P +PAA SS S F + A R A T I + ++AVA A SSRP
Sbjct: 82 PAPPSPAAWSSLISSFSQNGLPAAAFDAFRRMLAAGVPATDRNIPSAAKAVAAAEDSSRP 141
Query: 92 PVLP 81
P+ P
Sbjct: 142 PLAP 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,171
Number of Sequences: 37544
Number of extensions: 374536
Number of successful extensions: 1335
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -