Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C24
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical pr...    38   0.003
U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of ap...    38   0.003
AL117202-9|CAB57892.1|  352|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U43282-1|AAA83613.2|  547|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z80789-4|CAC35816.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z69788-9|CAC35811.1|  350|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    27   8.1  
AC024793-7|AAF60687.1|   91|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical
           protein C50B8.2 protein.
          Length = 308

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
 Frame = +1

Query: 184 RLASFK----DWPRCMGQKPEELAAAGFFYTGHG-DKT--KCFYCDGGLKDWENDDVPWE 342
           RLA+F+    D  R +    ++LA AG+F   +  DKT  KC +C   L D++  D PWE
Sbjct: 170 RLATFQNFIFDKKRNVKCTSKKLAKAGWFSIANKKDKTSAKCPFCLVEL-DFDESDDPWE 228

Query: 343 QHARWFDRCAYVQLVK 390
           +H ++   C +++L K
Sbjct: 229 EHQKFSASCDFIKLGK 244



 Score = 34.3 bits (75), Expect = 0.040
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +1

Query: 166 YATEVARLASFK----DWPRCMGQKPEELAAAGFFYTGHGD---KTKCFYCDGGLKDWEN 324
           Y +   R ASFK    D    +    E+LA AGF+ T   +     KC +C   + ++E 
Sbjct: 21  YISAAERFASFKGFVYDKRINIACTSEKLARAGFYSTASPEFPASAKCPFCMLEI-NFEQ 79

Query: 325 DDVPWEQHARWFDRCAYVQL 384
            D PWE+H      C +V +
Sbjct: 80  CDDPWEKHKSGSPHCEFVMI 99


>U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of
           apoptosis homolog protein.
          Length = 308

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
 Frame = +1

Query: 184 RLASFK----DWPRCMGQKPEELAAAGFFYTGHG-DKT--KCFYCDGGLKDWENDDVPWE 342
           RLA+F+    D  R +    ++LA AG+F   +  DKT  KC +C   L D++  D PWE
Sbjct: 170 RLATFQNFIFDKKRNVKCTSKKLAKAGWFSIANKKDKTSAKCPFCLVEL-DFDESDDPWE 228

Query: 343 QHARWFDRCAYVQLVK 390
           +H ++   C +++L K
Sbjct: 229 EHQKFSASCDFIKLGK 244



 Score = 34.3 bits (75), Expect = 0.040
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = +1

Query: 166 YATEVARLASFK----DWPRCMGQKPEELAAAGFFYTGHGD---KTKCFYCDGGLKDWEN 324
           Y +   R ASFK    D    +    E+LA AGF+ T   +     KC +C   + ++E 
Sbjct: 21  YISAAERFASFKGFVYDKRINIACTSEKLARAGFYSTASPEFPASAKCPFCMLEI-NFEQ 79

Query: 325 DDVPWEQHARWFDRCAYVQL 384
            D PWE+H      C +V +
Sbjct: 80  CDDPWEKHKSGSPHCEFVMI 99


>AL117202-9|CAB57892.1|  352|Caenorhabditis elegans Hypothetical
           protein Y47D3A.12 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -3

Query: 378 YVCTPVEPTCVLFP-RNIVILPILKTTVAIEAFSFVTVACVKESG 247
           YVCT + PT    P R I + P+L  T ++        +C   SG
Sbjct: 4   YVCTKLCPTATCPPLRVIYLFPLLPLTGSVSEHDITMYSCTSPSG 48


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -3

Query: 441 CSYRIRFRYNLLYIVTTLHELYVCTPVEPTCVL---FPRNIVILPILKTTVAIEAF 283
           CSY    RY+    VTT   + +   ++ +C++   F  N++I    KTTV+ E F
Sbjct: 227 CSYSPGERYSAYENVTTSQSICISIVLQFSCIMISSFGSNLLIHITSKTTVSEEVF 282


>U43282-1|AAA83613.2|  547|Caenorhabditis elegans Hypothetical
           protein T22E5.3 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 374 YAHRSNQRACCSQGTSSFSQSLRP 303
           Y H+S+ ++ CSQGT      LRP
Sbjct: 360 YNHKSDCQSVCSQGTDDRRSMLRP 383


>AL022716-5|CAB97232.1|  291|Caenorhabditis elegans Hypothetical
           protein C24F3.6 protein.
          Length = 291

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 79  DGSTGGRDECGARATAREPVRMPGPVHP 162
           DGS GG+ E GA     +P R   P HP
Sbjct: 231 DGSPGGQGEKGASGEPGQPGRDGQPGHP 258


>Z80789-4|CAC35816.1|  350|Caenorhabditis elegans Hypothetical
           protein F09A5.4c protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 121 TAREPVRMPGPVHPQYATEVARLAS 195
           ++ +P+  PGP H Q A+E  R++S
Sbjct: 17  SSSDPITPPGPHHQQSASEPGRVSS 41


>Z69788-9|CAC35811.1|  350|Caenorhabditis elegans Hypothetical
           protein F09A5.4c protein.
          Length = 350

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 121 TAREPVRMPGPVHPQYATEVARLAS 195
           ++ +P+  PGP H Q A+E  R++S
Sbjct: 17  SSSDPITPPGPHHQQSASEPGRVSS 41


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 274 DKTKCFYCDGGLKDWENDDVPWEQHARWFDRCAYVQLVKGRDYIQ 408
           ++TKCFYCD    +W+    P+    R  +    V   K R++ Q
Sbjct: 74  EQTKCFYCD-SRTEWKPQREPYRLSHRIENVVTEVMDDKNRNWYQ 117


>AC024793-7|AAF60687.1|   91|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.6 protein.
          Length = 91

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 362 SNQRACCSQGTSSFSQSL 309
           S  + CCS G+SS SQS+
Sbjct: 71  SRSKMCCSTGSSSISQSI 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,355,167
Number of Sequences: 27780
Number of extensions: 286775
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)