Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C23
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0045 - 5972122-5972274,5974041-5974070,5976206-5977030,597...    27   3.1  
02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072     27   5.3  
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    26   7.1  
10_07_0068 + 12573683-12573919,12574010-12574160,12575230-12575675     26   9.3  
03_04_0015 + 16453138-16453356,16453446-16453970                       26   9.3  

>05_02_0045 -
           5972122-5972274,5974041-5974070,5976206-5977030,
           5977110-5977196,5977294-5977395
          Length = 398

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 140 ICVTYVLNRQRHASLTNIRWCLSGCFCVATSKILSLKCPNKMLLL 274
           ICV Y+L    H SL      LSG           LK   K+LL+
Sbjct: 7   ICVDYILKLNHHVSLREYPSLLSGLEKQVCKGFAGLKTHMKLLLM 51


>02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072
          Length = 735

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 215 FCVATSKILSLKCPNKMLLLHSLLNYCVG 301
           F  A ++ ++L CPN  LLL +  NY  G
Sbjct: 116 FSSAKNRFVALGCPNLGLLLDATENYVTG 144


>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 227  TSKILSLKCPNKMLLLHSLLNYCVGL 304
            T+K+LSL C    +LLH+     VG+
Sbjct: 1267 TAKVLSLSCAISSVLLHAKTRQSVGI 1292


>10_07_0068 +
          12573683-12573919,12574010-12574160,12575230-12575675
          Length = 277

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 14 SLPKWRDNFLPY 49
          SLP+WRD FL Y
Sbjct: 14 SLPEWRDKFLAY 25


>03_04_0015 + 16453138-16453356,16453446-16453970
          Length = 247

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 14 SLPKWRDNFLPY 49
          SLP+WRD+FL Y
Sbjct: 14 SLPEWRDHFLNY 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,181,617
Number of Sequences: 37544
Number of extensions: 132852
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)