Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C22
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    55   5e-09
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    26   2.9  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   5.0  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   5.0  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   5.0  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   6.6  
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.7  

>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 55.2 bits (127), Expect = 5e-09
 Identities = 27/65 (41%), Positives = 38/65 (58%)
 Frame = +3

Query: 288 RIDIIHRNVVWQKKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGI 467
           R DI+HR V+++        A +K R E+   G+K + QKG G AR G   SP+ RGG  
Sbjct: 34  RRDILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGAK 93

Query: 468 AHGPR 482
           +HGP+
Sbjct: 94  SHGPK 98


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +3

Query: 156 VRKDWKYAPQYTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRIDIIHRNVVWQKKY 332
           VR+DW  + +  +P  LW    D   +  +GL      V AAP + D+   +V+ Q +Y
Sbjct: 180 VRRDWLDSIKPGQPETLW---FDQNTQHVIGLIVTR--VDAAPGKYDLSVTSVIVQTEY 233


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 341 HPSIFFLPHNITVNDVYSRRSSINK 267
           HP IF++ H    ND+Y  +   NK
Sbjct: 374 HPPIFYIGHVPVFNDIYLTKIVKNK 398


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 21  YLLFRMTSALINAIKKLHISITPHIRHSTNNAI-VSSASS 137
           ++ F+  +ALI+ ++ L  S  PH+R+ +  A+ ++ A+S
Sbjct: 607 FICFKDPNALISTVELLVDSYNPHVRYGSAIALGIACANS 646


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 193 FVYCGAYFQSFLTIFSVFVEDAD 125
           F+YC   F  FLT+FS  +ED D
Sbjct: 506 FLYCP--FTPFLTVFSHLLEDDD 526


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 102 STNNAIVSSASSTNTLNIVRKDWKYAPQYTKPRELWIENL 221
           STNN+  SS+S  N L  + K     P  +     + ENL
Sbjct: 228 STNNSTTSSSSMANGLQSISKHSAAFPLLSNATSFFGENL 267


>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 149

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 332 IFFLPHNITVNDV 294
           +FFLPH+  VNDV
Sbjct: 71  LFFLPHSCGVNDV 83


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 383 W*KALASERIGTR*TWINSITTFSRWWYRSWTTFRQNTLLH 505
           W KA       +R +W + +T F+R W   +TT+   T+ +
Sbjct: 465 WKKAFYKTFYESR-SWFHLVTNFNRIWVIHFTTYWYYTVFN 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,844
Number of Sequences: 5004
Number of extensions: 45224
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)