Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C22
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0470 + 8723772-8724705,8724900-8724971,8725315-8725376 69 2e-12
11_06_0209 + 21282079-21282369,21287029-21287137,21287462-212875... 69 3e-12
12_02_0377 + 18342631-18342675,18343654-18343771,18344233-183443... 52 3e-07
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 28 3.8
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 3.8
02_01_0120 + 884467-887649 28 3.8
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 5.0
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521... 27 6.6
10_02_0181 + 6348677-6348946,6348963-6349176,6351048-6351413,635... 27 6.6
08_02_1570 + 27931057-27931367,27931486-27931550,27931763-279318... 27 6.6
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939... 27 6.6
>03_02_0470 + 8723772-8724705,8724900-8724971,8725315-8725376
Length = 355
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +3
Query: 276 AAPPRID--IIHRNVVWQKKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPL 449
+APP ++HR ++ ++ + A T TR EVRGGG+KP+ QK G+AR GS+R+PL
Sbjct: 86 SAPPSTARAVVHRAIITDRQNKRRGTASTLTRGEVRGGGRKPYQQKKTGKARRGSMRTPL 145
Query: 450 FRGGGIAHGPR 482
GGG+ GP+
Sbjct: 146 RPGGGVIFGPK 156
>11_06_0209 +
21282079-21282369,21287029-21287137,21287462-21287580,
21287722-21287829,21287943-21288062,21288838-21289011,
21289111-21289212
Length = 340
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/91 (40%), Positives = 48/91 (52%)
Frame = +3
Query: 210 IENLDTLQEQKLGLFELHPLVYAAPPRIDIIHRNVVWQKKYRWVSWAHTKTRAEVRGGGK 389
+ + + G L V+ P R DI+HR V TKT +EV G G+
Sbjct: 140 VARVTNFHNEDKGFMVLDGDVFDVPIRKDIVHR----------VGTHSTKTISEVSGTGR 189
Query: 390 KPWPQKGLGRARHGSIRSPLFRGGGIAHGPR 482
KP+ QKG GRARHG++R P FRGG HGP+
Sbjct: 190 KPYNQKGTGRARHGTLRGPQFRGGATMHGPK 220
>12_02_0377 +
18342631-18342675,18343654-18343771,18344233-18344380,
18345142-18345220,18345330-18345449,18346112-18346285,
18346424-18346525
Length = 261
Score = 52.0 bits (119), Expect = 3e-07
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 390 KPWPQKGLGRARHGSIRSPLFRGGGIAHGPR 482
KP+ QKG GRARHG++R P FRGG HGP+
Sbjct: 111 KPYKQKGTGRARHGTLRGPQFRGGATMHGPK 141
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 63 KKLHISITPHIRHSTNNAIVSSASSTNTLNIVRKD 167
K HI TP + HS + A+ + ++ N N+V KD
Sbjct: 297 KYSHIQWTPSVAHSLSLALENICAAKNAENVVFKD 331
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 66 KLHISITPHIRHSTNNAIVSSASSTNTLNIVRKDWKYAPQYTKPRELWIEN 218
KL +S+ P HS++ VS+A ST++ +I+ D + Q+ +P W N
Sbjct: 2948 KLEVSVCPVTMHSSS---VSNAGSTSSTSII--DEVFENQWYRPTSGWGSN 2993
>02_01_0120 + 884467-887649
Length = 1060
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 345 WAHTKTRAEVRGGGKKPWPQK 407
W H RA+V GGG PWP +
Sbjct: 860 WLHE--RADVEGGGALPWPAR 878
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 24 LLFRMTSALINAIKKLHISITPHIRHSTNNAIVSSASSTNTLNIVR 161
+LF M L +KKLHIS P++ + + +S L + R
Sbjct: 1245 ILFHMPHLLYTYVKKLHISDCPNLVFCSRKVGFAGFTSLEELTVTR 1290
>11_06_0346 -
22549699-22549721,22549857-22549999,22550100-22552175,
22552305-22552822
Length = 919
Score = 27.5 bits (58), Expect = 6.6
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Frame = +3
Query: 9 FIITYLLFRMT--SALINAIKKLHISITPHIRHSTNNAIVSSASSTNTLNI--VRKDW-K 173
F++ YL R T S L IK+LHI T + H+T + I S L + +R W +
Sbjct: 500 FMLRYLSVRNTRVSKLPPQIKELHILGTLDVSHTTISEIPSEVWELKHLKMLDLRGTWIR 559
Query: 174 YAPQYTKPRELW-IENLD 224
+ P+ K +EL +E LD
Sbjct: 560 HLPE--KVKELTSLERLD 575
>10_02_0181 +
6348677-6348946,6348963-6349176,6351048-6351413,
6351607-6351728,6351767-6352093
Length = 432
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 195 PRELWIENLDTLQEQKLGLFELHPLVYAAPPRID 296
P W E+LD ++ L F PL A PR+D
Sbjct: 386 PDGTWPEDLDMMESSGLVTFMATPLQVVAMPRLD 419
>08_02_1570 +
27931057-27931367,27931486-27931550,27931763-27931841,
27931992-27932010,27932091-27932210,27932557-27932626,
27932709-27932752,27932918-27932959,27933033-27933092,
27933413-27933470,27934718-27935376
Length = 508
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +3
Query: 162 KDWKYAPQYTKPR--ELWIENLDTLQEQKLGLFE 257
K KY P P ELW L T Q Q+ G+FE
Sbjct: 250 KGSKYTPAKLPPEPIELWAYELCTRQPQETGIFE 283
>02_04_0022 -
18992517-18993033,18993119-18993360,18993535-18993923,
18995447-18995603
Length = 434
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 129 ASSTNTLNIVRKDWKYAPQYT 191
+S+ TLN + DW YAP YT
Sbjct: 106 SSAVRTLNPEQADWFYAPVYT 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,795
Number of Sequences: 37544
Number of extensions: 295808
Number of successful extensions: 811
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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