Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C22
(511 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009858-1|AAH09858.1| 311|Homo sapiens mitochondrial ribosomal... 156 5e-38
BC000756-1|AAH00756.1| 263|Homo sapiens mitochondrial ribosomal... 156 5e-38
AB049635-1|BAB40840.1| 311|Homo sapiens mitochondrial ribosomal... 156 5e-38
AY007152-1|AAG02005.1| 211|Homo sapiens protein ( Homo sapiens ... 110 2e-24
AF132962-1|AAD27737.1| 311|Homo sapiens CGI-28 protein protein. 91 3e-18
AK023324-1|BAB14527.1| 190|Homo sapiens protein ( Homo sapiens ... 31 2.3
BC065009-1|AAH65009.1| 599|Homo sapiens ZNF343 protein protein. 29 7.1
BC011862-1|AAH11862.2| 485|Homo sapiens ZNF343 protein protein. 29 7.1
AL049650-4|CAI22574.1| 599|Homo sapiens zinc finger protein 343... 29 7.1
AK096911-1|BAC04892.1| 599|Homo sapiens protein ( Homo sapiens ... 29 7.1
AK055734-1|BAB71000.1| 509|Homo sapiens protein ( Homo sapiens ... 29 7.1
>BC009858-1|AAH09858.1| 311|Homo sapiens mitochondrial ribosomal
protein L4 protein.
Length = 311
Score = 156 bits (378), Expect = 5e-38
Identities = 63/118 (53%), Positives = 93/118 (78%)
Frame = +3
Query: 153 IVRKDWKYAPQYTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRIDIIHRNVVWQKKY 332
++RK P + +P + W+E+L +++++GL +LHP V+A PR+DI+H+ +WQK +
Sbjct: 47 VLRKVELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNF 106
Query: 333 RWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSGKTHFFI 506
+ +S+A TKTRAEVRGGG+KPWPQKG GRARHGSIRSPL+RGGG+AHGPR +++++
Sbjct: 107 KRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYM 164
>BC000756-1|AAH00756.1| 263|Homo sapiens mitochondrial ribosomal
protein L4 protein.
Length = 263
Score = 156 bits (378), Expect = 5e-38
Identities = 63/118 (53%), Positives = 93/118 (78%)
Frame = +3
Query: 153 IVRKDWKYAPQYTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRIDIIHRNVVWQKKY 332
++RK P + +P + W+E+L +++++GL +LHP V+A PR+DI+H+ +WQK +
Sbjct: 47 VLRKVELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNF 106
Query: 333 RWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSGKTHFFI 506
+ +S+A TKTRAEVRGGG+KPWPQKG GRARHGSIRSPL+RGGG+AHGPR +++++
Sbjct: 107 KRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYM 164
>AB049635-1|BAB40840.1| 311|Homo sapiens mitochondrial ribosomal
protein L4 (L4mt) protein.
Length = 311
Score = 156 bits (378), Expect = 5e-38
Identities = 63/118 (53%), Positives = 93/118 (78%)
Frame = +3
Query: 153 IVRKDWKYAPQYTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRIDIIHRNVVWQKKY 332
++RK P + +P + W+E+L +++++GL +LHP V+A PR+DI+H+ +WQK +
Sbjct: 47 VLRKVELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNF 106
Query: 333 RWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSGKTHFFI 506
+ +S+A TKTRAEVRGGG+KPWPQKG GRARHGSIRSPL+RGGG+AHGPR +++++
Sbjct: 107 KRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYM 164
>AY007152-1|AAG02005.1| 211|Homo sapiens protein ( Homo sapiens
clone CDABP0091 mRNA sequence. ).
Length = 211
Score = 110 bits (265), Expect = 2e-24
Identities = 44/64 (68%), Positives = 57/64 (89%)
Frame = +3
Query: 315 VWQKKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSGKT 494
+WQK ++ +S+A TKTRAEVRGGG+KPWPQKG GRARHGSIRSPL+RGGG+AHGPR +
Sbjct: 1 MWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTS 60
Query: 495 HFFI 506
++++
Sbjct: 61 YYYM 64
>AF132962-1|AAD27737.1| 311|Homo sapiens CGI-28 protein protein.
Length = 311
Score = 90.6 bits (215), Expect = 3e-18
Identities = 37/81 (45%), Positives = 59/81 (72%)
Frame = +3
Query: 153 IVRKDWKYAPQYTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRIDIIHRNVVWQKKY 332
++RK P + +P + W+E+L +++++GL +LHP V+A PR+DI+H+ +WQK +
Sbjct: 47 VLRKVELPVPTHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNF 106
Query: 333 RWVSWAHTKTRAEVRGGGKKP 395
+ +S+A TKTRAEVRGGG KP
Sbjct: 107 KRISYAKTKTRAEVRGGGGKP 127
>AK023324-1|BAB14527.1| 190|Homo sapiens protein ( Homo sapiens
cDNA FLJ13262 fis, clone OVARC1000912. ).
Length = 190
Score = 31.1 bits (67), Expect = 2.3
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 378 GGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGP 479
G GK P+ GLGR G S LFR G+A P
Sbjct: 123 GAGKPGAPRGGLGRGMKGKFGSGLFRFTGLAARP 156
>BC065009-1|AAH65009.1| 599|Homo sapiens ZNF343 protein protein.
Length = 599
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 324 KKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSG 488
++Y VS + RGGG KPW + R + SPL R PR G
Sbjct: 156 QQYSHVSCWFENAEGQERGGGSKPWSARTEERETSRAFPSPLQRQSA---SPRKG 207
>BC011862-1|AAH11862.2| 485|Homo sapiens ZNF343 protein protein.
Length = 485
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 324 KKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSG 488
++Y VS + RGGG KPW + R + SPL R PR G
Sbjct: 42 QQYSHVSCWFENAEGQERGGGSKPWSARTEERETSRAFPSPLQRQSA---SPRKG 93
>AL049650-4|CAI22574.1| 599|Homo sapiens zinc finger protein 343
protein.
Length = 599
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 324 KKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSG 488
++Y VS + RGGG KPW + R + SPL R PR G
Sbjct: 156 QQYSHVSCWFENAEGQERGGGSKPWSARTEERETSRAFPSPLQRQSA---SPRKG 207
>AK096911-1|BAC04892.1| 599|Homo sapiens protein ( Homo sapiens
cDNA FLJ39592 fis, clone SKNSH2000819, moderately
similar to ZINC FINGER PROTEIN 133. ).
Length = 599
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 324 KKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSG 488
++Y VS + RGGG KPW + R + SPL R PR G
Sbjct: 156 QQYSHVSCWFENAEGQERGGGSKPWSARTEERETSRAFPSPLQRQSA---SPRKG 207
>AK055734-1|BAB71000.1| 509|Homo sapiens protein ( Homo sapiens
cDNA FLJ31172 fis, clone KIDNE2000051, moderately
similar to ZINC FINGER PROTEIN 133. ).
Length = 509
Score = 29.5 bits (63), Expect = 7.1
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 324 KKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHGPRSG 488
++Y VS + RGGG KPW + R + SPL R PR G
Sbjct: 66 QQYSHVSCWFENAEGQERGGGSKPWSARTEERETSRAFPSPLQRQSA---SPRKG 117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,490,763
Number of Sequences: 237096
Number of extensions: 1597832
Number of successful extensions: 3027
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3027
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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