Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C22
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical ...   135   2e-32
Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical...    31   0.64 
Z70034-8|CAA93857.1|  586|Caenorhabditis elegans Hypothetical pr...    30   0.85 

>AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical
           protein T23B12.2 protein.
          Length = 299

 Score =  135 bits (326), Expect = 2e-32
 Identities = 62/130 (47%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
 Frame = +3

Query: 120 VSSASSTNTLNIVRKDWKYAPQ-YTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRID 296
           VSS SS  +++  R+ W+     + K  + W+ NLDT++++KLGL +LHP ++   PRID
Sbjct: 22  VSSTSSGESIDTRRELWRKPENPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRID 81

Query: 297 IIHRNVVWQKKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGIAHG 476
           I+HRN+ WQ  YR V      T+AE+ GGG+KPWPQK  GRA  GSIRSP F  GG A+G
Sbjct: 82  ILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKPWPQKKTGRAHVGSIRSPQFIRGGFANG 141

Query: 477 PRSGKTHFFI 506
            R  +T F++
Sbjct: 142 VRGPRTWFYM 151


>Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical
           protein T23G11.7a protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 48  LINAIKKLHISITPHI-RHSTNNAIVSSASSTNTLNIVRKDWKYAPQYTKPRELWIEN 218
           LI+ I+ LHI    HI  HS    + +  + T+  N++ K   +AP+Y     L I N
Sbjct: 209 LIDTIRGLHIPQITHIFNHSEAPTLTALQNLTHLFNVICKVLHFAPKYPILTNLQIIN 266


>AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical
           protein Y54E2A.12 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +3

Query: 126 SASSTNTLNIVRKDWKYAPQYTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRIDIIH 305
           S+S  +     + D+   P Y +  EL +E+L   +E      ++H  +   PP I   H
Sbjct: 109 SSSYDSDFESAQSDFDEEPAYEESEELTLEDLKGHKEWNQVELDVHRTLSRFPPNISDTH 168

Query: 306 RNVV 317
           R+V+
Sbjct: 169 RDVL 172


>Z70034-8|CAA93857.1|  586|Caenorhabditis elegans Hypothetical
           protein C18E9.8 protein.
          Length = 586

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 9   FIITYLLFRMTSALINAIKKLHISI---TPHIRHSTNNAIVSSASSTNTLNIVRKDWKYA 179
           FI   L FR+   + N  +++++S+   TP          + +   +N LN+V KD    
Sbjct: 71  FIFEKLQFRVKQVMENGTRRVYLSVQATTPAEWQLLVQLRIKTGCQSNILNVVDKDVYKF 130

Query: 180 PQYTKPRELWIENLD 224
             ++ P  + I+N D
Sbjct: 131 DSFSYPLNVEIQNSD 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,481,376
Number of Sequences: 27780
Number of extensions: 262302
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)