Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C22
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.45 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +3

Query: 117 IVSSASSTNTLNIVRKDWKYAPQYTKPRELWIENLDTLQEQKLGLFELHPLVYAAPPRID 296
           I   A + +    V +DWKY         LWI  +  +    L + +  P +Y     ID
Sbjct: 522 IAQHAKNKDKFESVEEDWKYVAMVLDRIFLWIFTVACVLGTVLIILQA-PSLYDTTKPID 580

Query: 297 IIHRNVVWQK 326
           I +  +  +K
Sbjct: 581 IKYSKIAKKK 590


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 156 VRKDWKYAPQYTKPRELWIENLDTL 230
           V++DWKY         LWI  L  L
Sbjct: 507 VKEDWKYVAMVLDRLFLWIFTLAVL 531


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 156 VRKDWKYAPQYTKPRELWIENLDTL 230
           V++DWKY         LWI  L  L
Sbjct: 507 VKEDWKYVAMVLDRLFLWIFTLAVL 531


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 465 YHHREKVVIELIHV*RVPILSEAKAFY-HXXXXXXXXLCVPMTP 337
           +HH +   ++ +H  + P LSE+ + Y +           P TP
Sbjct: 353 HHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATPCTP 396


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 282 PPRIDIIHRNVVWQKKYRWV 341
           P R +IIH   +   KY WV
Sbjct: 537 PARYNIIHFKQIEPGKYEWV 556


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 156 VRKDWKYAPQYTKPRELWIENL 221
           V++DWKY         LWI  L
Sbjct: 502 VKEDWKYVAMVLDRLFLWIFTL 523


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 358 FVCAHDTHLYFFCH 317
           F+C ++ H +  CH
Sbjct: 735 FLCRYEAHCFALCH 748


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = +3

Query: 75  ISITPHIRHSTNNAIVSSASSTNTLNIVRKDWKYAPQYTKPRELWIENLDTLQEQKL 245
           +S T    H     I S  S+ +  NI     +  P Y+   ++W+E L      K+
Sbjct: 114 VSYTSGFYHIPVIGISSRDSAFSDKNIHVSFLRTVPPYSHQTDVWVELLKHFNYMKV 170


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 122 YNCIICRMPYMRCY*YMQFFYSIYK 48
           Y C+IC   Y      M   Y+ +K
Sbjct: 36  YRCVICERVYCSRNSLMTHIYTYHK 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,067
Number of Sequences: 438
Number of extensions: 3042
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)