Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C21
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0520 + 18286435-18287279,18287818-18288697 30 1.2
08_02_1092 + 24267737-24268641,24269005-24269884 28 3.6
05_01_0143 - 944169-947273 28 3.6
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 28 3.6
09_04_0432 + 17510820-17510996,17511076-17511546 28 4.8
01_06_0928 + 33085403-33089224 27 6.3
12_01_0731 - 6516894-6517473,6517485-6519574 27 8.4
11_06_0503 - 24374657-24375211 27 8.4
05_03_0293 - 11813846-11813965,11814073-11814408,11814516-118146... 27 8.4
04_04_1170 + 31449978-31450135,31451625-31451661,31452158-314522... 27 8.4
01_07_0106 - 41107673-41107942,41108362-41108574,41108877-411090... 27 8.4
>09_04_0520 + 18286435-18287279,18287818-18288697
Length = 574
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 456 FNLCPRCVIS*VPSLTSTPGIEAKQRDTSLAACVNPA 346
F+L RC +S ++ PG++A QR+ + A CV PA
Sbjct: 323 FDLSLRCSVSPTVIKSANPGLDALQRNNA-AYCVQPA 358
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 456 FNLCPRCVIS*VPSLTSTPGIEAKQRDTSLAACVNPA 346
F+L RC +S ++ PG +A QR+ A CV PA
Sbjct: 343 FDLSLRCAVSPTVVKSANPGPDALQRNNQ-AYCVQPA 378
>05_01_0143 - 944169-947273
Length = 1034
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 390 AKQRDTSLAACVNPARKRSTSTLGFSDK 307
AK++ SL ACVNPA ++ S + F K
Sbjct: 1007 AKKKKPSLLACVNPALQKQHSDMVFFTK 1034
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +2
Query: 71 YSLADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKLEK 250
Y+L DG V + K K +++KRR+R R + E++E M S +NV ++
Sbjct: 64 YALPGDGDLVVECEEEGEKGEK-RVKKKRRSRKKRKVKEMEEKMESKEDVSDDNVEDMQD 122
Query: 251 ADILE 265
+ +E
Sbjct: 123 GNDME 127
>09_04_0432 + 17510820-17510996,17511076-17511546
Length = 215
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 146 ERKRRARINRCLDELKELMVSA 211
ERKRR RIN LD L+ L+ SA
Sbjct: 36 ERKRRERINAHLDTLRGLVPSA 57
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +2
Query: 32 TEHTMSTMSYEIAYSLADDGPQPVSRTYQYRKVMKPM---------LERKRRARINRCLD 184
TE + + Y+I +A+ G Q V KP+ L K R I++ L+
Sbjct: 46 TEDVLDELEYDILKRVAEKGAQASLMVASSNSVPKPLHAASNKMSNLRPKNRKLISK-LE 104
Query: 185 ELKELMVSA 211
ELKE++V A
Sbjct: 105 ELKEILVEA 113
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 27.1 bits (57), Expect = 8.4
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +1
Query: 241 IGES*YFGTDSSSPSQTKAPTTLVTEPKCGRGSLPSWIHARSQ*SVTLFGFYSWSGREAG 420
+G S + G SS SQ K+ + L GS+PSWI + +V F SG
Sbjct: 365 LGASGFSGVLPSSISQLKSLSLLEVSGLELAGSMPSWISNLTSLNVLKFFSCGLSGPIPA 424
Query: 421 YSANDTPWTQIE*Y 462
N T T++ Y
Sbjct: 425 SIGNLTKLTKLALY 438
>11_06_0503 - 24374657-24375211
Length = 184
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 80 ADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 202
+D+G PV + +K K + R +A+IN C+ +E M
Sbjct: 43 SDEGKAPVMEKKKKKKKAKTKMVRFTQAQINNCITYKEEEM 83
>05_03_0293 -
11813846-11813965,11814073-11814408,11814516-11814617,
11814729-11814912,11815012-11815196,11815949-11816095,
11816310-11816426
Length = 396
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 286 QTKAPTTLVTEPKCGRGSLP 345
+TK P +T P GRG+LP
Sbjct: 110 RTKMPARFLTTPSAGRGTLP 129
>04_04_1170 +
31449978-31450135,31451625-31451661,31452158-31452273,
31452389-31452419,31452597-31452662,31452753-31452818,
31452969-31453223,31453598-31453687
Length = 272
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 95 QPVSRTYQYRKVMKPMLERKRRA-RINRCLDELKELMVSALQSEGENVAKLEKA 253
Q +T + R V+ ++ RKRR RIN L L+EL+ + ++ + V+ L++A
Sbjct: 95 QEEEQTPKLRSVIAHLVSRKRRRDRINEKLKALQELLPNCTKT--DKVSMLDEA 146
>01_07_0106 -
41107673-41107942,41108362-41108574,41108877-41109041,
41109431-41109649,41110205-41110324,41110427-41110489,
41111034-41111606,41111691-41111858,41112414-41112495,
41112667-41112743,41113031-41113101,41114315-41114363
Length = 689
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/36 (25%), Positives = 22/36 (61%)
Frame = +2
Query: 359 HAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNDMQ 466
H +V + + G++V+L +++ + H+L+D+Q
Sbjct: 340 HVTEDVQNLKSKLNGLEVKLEEIILSEVKHKLSDLQ 375
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,747
Number of Sequences: 37544
Number of extensions: 279716
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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