Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C20
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 45 2e-05
04_03_0649 - 18402976-18403220,18403305-18404499 38 0.003
08_01_0192 + 1594530-1594682,1594755-1594955,1595051-1595280,159... 30 0.62
10_08_0009 + 14075929-14076789 29 1.4
03_02_0517 + 9054816-9055655 29 1.9
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833... 28 3.3
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 4.3
02_05_1001 + 33423562-33424098 27 4.3
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 5.7
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 5.7
10_08_0011 + 14088375-14089241 27 7.6
10_02_0002 - 4018145-4018545,4018563-4018605 27 7.6
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778... 27 7.6
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 7.6
05_01_0228 + 1692117-1692924,1693321-1693431,1693536-1693675,169... 27 7.6
02_05_1071 - 33876061-33877308,33877593-33877898 27 7.6
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 27 7.6
01_06_0630 - 30723903-30724496 27 7.6
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 45.2 bits (102), Expect = 2e-05
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +2
Query: 50 SFCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDD 229
S +HL Y S I +T V+ + + +N+ + ++ L++G D+
Sbjct: 62 SLYSHLYYSSLSID-ETRCAVAPPSSGEESSILSNFSSSIKSSGGGFAVKTILSIGTDEF 120
Query: 230 TEDPQK--YNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 358
ED ++ + R AF NS++ LA GFDG+DL+W+ P
Sbjct: 121 REDVSNAAFSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 37.9 bits (84), Expect = 0.003
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 236 DPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 358
DP + + P +R AF +A+ +A + GFDG+D++W+ P
Sbjct: 131 DPA-FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>08_01_0192 +
1594530-1594682,1594755-1594955,1595051-1595280,
1595596-1595766,1595902-1596007,1596339-1596545,
1596638-1596802
Length = 410
Score = 30.3 bits (65), Expect = 0.62
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 290 TNSALLLAEQYGFDGIDLSWQLPKRKPKKIRSSIGSFW 403
T +L+ E + FD L+W + R P +I++++ +W
Sbjct: 339 TKKMILVGEVFRFDLDTLTWSVIGRMPFRIKTALAGYW 376
>10_08_0009 + 14075929-14076789
Length = 286
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Frame = +2
Query: 137 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL--- 307
D A+ + A+ K P L V L +GGD T N + A+ +A
Sbjct: 62 DTANLSPAAVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVS 119
Query: 308 -LAEQYGFDGIDLSWQ 352
L + YG DG+D+ ++
Sbjct: 120 GLIDAYGLDGVDVDYE 135
>03_02_0517 + 9054816-9055655
Length = 279
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 15 HVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 137
H C+ W L S P+C LPA+ + + IW L
Sbjct: 158 HQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>08_02_0992 +
23380855-23381195,23382464-23382506,23383306-23383371,
23384228-23384428,23384450-23384707,23384798-23385013,
23385148-23385321,23386151-23386312,23386594-23386635
Length = 500
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 68 LYKSAGIQADTYKMVSLNENLDIDRAHANYR-AITNLKRQFPQLRVFLTVGGDDDTE--D 238
L + Q Y+++S+NE D A YR AI N Q ++ V + E
Sbjct: 3 LSSNISTQKTHYEVLSVNEGATYDEVRAGYRAAILNAHPDKSQAKLDSLVSSVEHGEFFS 62
Query: 239 PQKYNLLLESPQARTAF 289
QK +L P++RT +
Sbjct: 63 VQKAWEVLRDPKSRTEY 79
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 128 LDIDRAHANYRAITNLKRQFPQLRVFL 208
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>02_05_1001 + 33423562-33424098
Length = 178
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = -2
Query: 147 CARSMSKFSLSETILYVSA--WMPADLYSRWVQNERA 43
CA S E + + S W PAD+ + WV ERA
Sbjct: 80 CALVHSHGPYGENLFHGSGVGWAPADVVAAWVSRERA 116
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 5.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 140 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 247
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 5.7
Identities = 19/66 (28%), Positives = 24/66 (36%)
Frame = +2
Query: 179 RQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQYGFDGIDLSWQLP 358
R P L + + D D +YNLL + A +Y FDG L L
Sbjct: 5215 RMSPILNMVIEPSFDFDDPPTHQYNLLEPTSIITRKHVLGAHTWDHEYNFDGASLEKTLV 5274
Query: 359 KRKPKK 376
KP K
Sbjct: 5275 LHKPTK 5280
>10_08_0011 + 14088375-14089241
Length = 288
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 137 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALL-LA 313
D A+ + + +K P + V + +GGD +D K S + A +++ +
Sbjct: 62 DTANLSPADVAAVKAAHPNVSVMVGLGGDS-VQDTAKVFFSPTSVDSWVANAVASVSGII 120
Query: 314 EQYGFDGIDLSWQ 352
+ YG DG+D+ ++
Sbjct: 121 DAYGLDGVDVDYE 133
>10_02_0002 - 4018145-4018545,4018563-4018605
Length = 147
Score = 26.6 bits (56), Expect = 7.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 137 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 247
DRA A+YR + + + G DDD DP++
Sbjct: 111 DRAVADYRNVARVWTRVVSFGTTRGFGSDDDPSDPER 147
>09_06_0292 +
22075647-22075691,22077394-22077507,22077602-22077841,
22077926-22078003,22078094-22078162,22078420-22078545,
22079108-22079188,22079272-22079460,22079597-22080434,
22082290-22082411,22082482-22082701,22082910-22083055,
22083260-22083566,22083886-22084136,22084294-22084533,
22084930-22085238
Length = 1124
Score = 26.6 bits (56), Expect = 7.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 101 YKMVSLNENLDIDRAHANYRAITNLKR---QFPQLRVFLTVGGDDDTEDPQKYNLLLESP 271
Y V + E + ID+ + + ITN + +F RV LT D +D Q+ LLE
Sbjct: 746 YTSVEVQEGMKIDKGYISPHFITNQDKAIVEFENARVLLT---DQRVDDVQEILPLLEK- 801
Query: 272 QARTAFTNSALLLAE 316
T + L++AE
Sbjct: 802 --TTQLSVPLLIIAE 814
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 30 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 143
RTW+ +F + CC S I FH+ RIW+ +G
Sbjct: 170 RTWTYIFGA---CC-----STTVFIPSFHNYRIWSFLG 199
>05_01_0228 +
1692117-1692924,1693321-1693431,1693536-1693675,
1693865-1694075,1694148-1694415,1694543-1694696,
1694795-1695123,1695748-1695835
Length = 702
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 1 ARGSSTYAAYGLGACSFVLHPSAVQIC 81
A G YGLG C L P+ Q+C
Sbjct: 78 ASGEGADTVYGLGQCMGYLSPTDCQLC 104
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 306 RRAELVKAVRACGDSNKRLYFCGSSVSSSPP-TVKNTRN*GNCLFKFVI 163
RR+ L+ + N R + C SS SS+PP T + + G+ L + ++
Sbjct: 6 RRSRLLALLVGASRPNPRPFCCSSSSSSAPPATAREDGDGGDLLSRCLL 54
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 26.6 bits (56), Expect = 7.6
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = -1
Query: 187 KLSFQVCDRSIISVRPINVQILIE*NHFICVSLDAGRFVQQMGAERKSRLQVRRQHTCLS 8
+ +F++ + + S RP+ + +L E +C+ A R + M + +V H +
Sbjct: 500 RAAFEMLEDVLTSARPLQLAVLEESYKLVCIDDSAAREMADMLQDGSFWSEVEAVHLLVK 559
Query: 7 LV 2
L+
Sbjct: 560 LI 561
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 7.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 15 HVCCLRTWSLLFRSAPIC 68
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,434
Number of Sequences: 37544
Number of extensions: 200907
Number of successful extensions: 659
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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