Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C19
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 169 2e-43
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 169 2e-43
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 169 2e-43
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 124 8e-30
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 29 0.73
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 1.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.2
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 25 6.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 6.8
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 25 9.0
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 9.0
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 169 bits (412), Expect = 2e-43
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = +3
Query: 231 KNPIRYRXPGTCSCFXEIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 410
K P RYR PGT + EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 37 KKPHRYR-PGTVA-LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94
Query: 411 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 536
EA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 95 EAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 64.5 bits (150), Expect = 1e-11
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPQYLVGV*EKPH 241
MARTKQTARKSTGGKAPRKQLA+KAARK+AP G +KPH
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAP--ATGGVKKPH 40
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 169 bits (412), Expect = 2e-43
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = +3
Query: 231 KNPIRYRXPGTCSCFXEIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 410
K P RYR PGT + EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 37 KKPHRYR-PGTVA-LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94
Query: 411 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 536
EA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 95 EAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 64.5 bits (150), Expect = 1e-11
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPQYLVGV*EKPH 241
MARTKQTARKSTGGKAPRKQLA+KAARK+AP G +KPH
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAP--ATGGVKKPH 40
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 169 bits (412), Expect = 2e-43
Identities = 86/102 (84%), Positives = 91/102 (89%)
Frame = +3
Query: 231 KNPIRYRXPGTCSCFXEIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQ 410
K P RYR PGT + EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQ
Sbjct: 37 KKPHRYR-PGTVA-LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQ 94
Query: 411 EASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 536
EA EAYLV LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 95 EAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 64.5 bits (150), Expect = 1e-11
Identities = 33/42 (78%), Positives = 36/42 (85%)
Frame = +2
Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPQYLVGV*EKPH 241
MARTKQTARKSTGGKAPRKQLA+KAARK+AP G +KPH
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAP--ATGGVKKPH 40
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 124 bits (300), Expect = 8e-30
Identities = 67/101 (66%), Positives = 82/101 (81%), Gaps = 6/101 (5%)
Frame = +3
Query: 243 RYRXPGTCSCFXEIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGA 404
RYR PGT + EIR+YQ+ST+LLI++LPF R+VREI+ +F TD LR+QS A+
Sbjct: 21 RYR-PGT-TALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQC 78
Query: 405 LQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 527
LQEA+EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 79 LQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 28.7 bits (61), Expect = 0.73
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 159 KLLANNWLLKRRENRHPSTWLE 224
K+ A++ L+K RE+R PS+W E
Sbjct: 66 KIRASHLLVKHRESRRPSSWKE 87
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 267 SCFXEIRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYL 431
S + + +++ S LLI P Q +RE+A DF +F + + A E EAY+
Sbjct: 519 SLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYI 578
Query: 432 VGLFE 446
L E
Sbjct: 579 RSLQE 583
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 451 PTFAPSTPNA*PLCLKTSSSPGE 519
P AP+TP++ P+ +S+SP E
Sbjct: 199 PRSAPNTPSSHPMSAASSASPAE 221
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 125 TKQTARKSTGGKAPRKQLATKAARKSAPQYLVGV*EK 235
T++TA G A K++ A K AP Y+VGV E+
Sbjct: 104 TQETASAHLKGGA--KRVIISAPSKDAPMYVVGVNEE 138
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 376 FVSSLLPLALCKRPVKPIWWVCLKTPTFAPS 468
F S+ PL + + I WVC+ T FA S
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAES 701
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = -1
Query: 518 SPGELDVFRHNGYAFGVDGAKVGVFKQTHQIGFTGLLQSANGSRLETKIGFEVLSNFSNE 339
SPG D F + K+ + IGF L LE ++ + +L S
Sbjct: 166 SPGNHDEFTIRNLRLSFEPDKINNVEMAASIGFLAHLLQTLSKYLEKELAYPILCASSRS 225
Query: 338 SL 333
S+
Sbjct: 226 SI 227
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 490 IMVTRLAWMAQRLVSSNRPTR 428
I T W A RLV+ N PTR
Sbjct: 412 ITETNSNWFAHRLVAENDPTR 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,128
Number of Sequences: 5004
Number of extensions: 49094
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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