Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C18
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0561 + 4171812-4172144,4173468-4174253                           28   3.6  
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252...    27   8.3  

>07_01_0561 + 4171812-4172144,4173468-4174253
          Length = 372

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 226 IKPNGPIPKNYFFHLSVENLNGNENDVPVV 315
           I P G +  N++  L  E L G END PVV
Sbjct: 320 IGPQGELNDNFWEELLNEGLVGEENDNPVV 349


>09_04_0072 +
           14323449-14324274,14324351-14324447,14325175-14325277,
           14325359-14325412,14325495-14325569,14325597-14325650,
           14325687-14325755,14325840-14325923,14326115-14326312,
           14326428-14326927,14327011-14327140,14328226-14328317,
           14328776-14328954,14329114-14329316,14329398-14329499,
           14330047-14330209,14330690-14330979,14331088-14331225,
           14331311-14331390,14331510-14331606,14331685-14331814,
           14331921-14332162
          Length = 1301

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 121 IEAEMEIYFEKEVRIIDVSQNTSFLEISNNRRDFVIKPNGPIPKNY 258
           ++ + ++  +  V+ +DV ++T  LE+S N R       G +P NY
Sbjct: 877 LKEQRKLLSDSSVKYVDVGKDTYLLEVSENLR-------GSVPHNY 915


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,031
Number of Sequences: 37544
Number of extensions: 193129
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)