Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C18
         (496 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC066334-1|AAH66334.1|  137|Homo sapiens chromosome 13 open read...    34   0.31 
AL354833-2|CAC13101.1|  137|Homo sapiens chromosome 13 open read...    34   0.31 
AF036549-1|AAF04336.1|  117|Homo sapiens RGC32 protein.                34   0.31 
AL365360-3|CAI95313.1| 1317|Homo sapiens KIAA2026 protein.             33   0.72 
AB095946-1|BAC23122.1|  858|Homo sapiens KIAA2026 protein protein.     33   0.72 
AP001753-4|BAA95556.1|  387|Homo sapiens DNMT3L protein.               30   5.1  
AF194032-1|AAF05812.1|  387|Homo sapiens cytosine-5-methyltransf...    30   5.1  
BC002560-1|AAH02560.1|  386|Homo sapiens DNA (cytosine-5-)-methy...    29   6.7  

>BC066334-1|AAH66334.1|  137|Homo sapiens chromosome 13 open reading
           frame 15 protein.
          Length = 137

 Score = 33.9 bits (74), Expect = 0.31
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 304 RHFHYHSNFQRSNGKSNSSV*DRSVL*QSRVGCYLFRGSWYFEIRQLS 161
           RHFHY  + +R   +S++SV D S    S     L+R S+ F   +L+
Sbjct: 49  RHFHYEEHLERMKRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLN 96


>AL354833-2|CAC13101.1|  137|Homo sapiens chromosome 13 open reading
           frame 15 protein.
          Length = 137

 Score = 33.9 bits (74), Expect = 0.31
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 304 RHFHYHSNFQRSNGKSNSSV*DRSVL*QSRVGCYLFRGSWYFEIRQLS 161
           RHFHY  + +R   +S++SV D S    S     L+R S+ F   +L+
Sbjct: 49  RHFHYEEHLERMKRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLN 96


>AF036549-1|AAF04336.1|  117|Homo sapiens RGC32 protein.
          Length = 117

 Score = 33.9 bits (74), Expect = 0.31
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 304 RHFHYHSNFQRSNGKSNSSV*DRSVL*QSRVGCYLFRGSWYFEIRQLS 161
           RHFHY  + +R   +S++SV D S    S     L+R S+ F   +L+
Sbjct: 29  RHFHYEEHLERMKRRSSASVSDSSGFSDSESADSLYRNSFSFSDEKLN 76


>AL365360-3|CAI95313.1| 1317|Homo sapiens KIAA2026 protein.
          Length = 1317

 Score = 32.7 bits (71), Expect = 0.72
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 283 LNGNENDVPVVSRFVLNNVTLCND-VIKASQTINSLNVT 396
           L+ + N VPV S FV  N+T  N+ V+ +++ +N L+VT
Sbjct: 832 LSTSGNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVT 870


>AB095946-1|BAC23122.1|  858|Homo sapiens KIAA2026 protein protein.
          Length = 858

 Score = 32.7 bits (71), Expect = 0.72
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 283 LNGNENDVPVVSRFVLNNVTLCND-VIKASQTINSLNVT 396
           L+ + N VPV S FV  N+T  N+ V+ +++ +N L+VT
Sbjct: 373 LSTSGNSVPVSSNFVSQNITPVNESVVSSARAVNVLSVT 411


>AP001753-4|BAA95556.1|  387|Homo sapiens DNMT3L protein.
          Length = 387

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +1

Query: 229 KPNGPIPKNYFFHLSVENLNGNENDVPVVSRFVLNNVTLCNDVIKASQTINSLNVTSN 402
           KP  P P   FF + V+NL  N+ D+ V SRF+        DV   S   N++ V SN
Sbjct: 273 KPGSPRP---FFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQ-NAVRVWSN 326


>AF194032-1|AAF05812.1|  387|Homo sapiens
           cytosine-5-methyltransferase 3-like protein protein.
          Length = 387

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +1

Query: 229 KPNGPIPKNYFFHLSVENLNGNENDVPVVSRFVLNNVTLCNDVIKASQTINSLNVTSN 402
           KP  P P   FF + V+NL  N+ D+ V SRF+        DV   S   N++ V SN
Sbjct: 273 KPGSPRP---FFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQ-NAVRVWSN 326


>BC002560-1|AAH02560.1|  386|Homo sapiens DNA
           (cytosine-5-)-methyltransferase 3-like protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +1

Query: 229 KPNGPIPKNYFFHLSVENLNGNENDVPVVSRFVLNNVTLCNDVIKASQTINSLNVTSN 402
           KP  P P   FF + V+NL  N+ D+ V SRF+        DV   S   N++ V SN
Sbjct: 273 KPGSPGP---FFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQ-NAVRVWSN 326


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,055,920
Number of Sequences: 237096
Number of extensions: 1082764
Number of successful extensions: 2422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2422
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)