Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C17
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   1.2  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   1.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.2  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -2

Query: 304 ARLPRYNPSSIRSTLTSKLASVKEF*ESAACISTSAS 194
           A LP++  S  RS  T++LAS+  F +SA   STSAS
Sbjct: 676 ASLPQFWLSP-RSHNTARLASISSFAKSAVMNSTSAS 711


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +3

Query: 120 KLRHPHFLPSKLLIFFSSIN*MARQLAEVEIHAADSQNSLTDANLDVSVD 269
           +LR       KLL F   I    R   E  IHA +SQNS   A+L ++VD
Sbjct: 389 QLRRHEEHSQKLLKFIEEI----RNDYEERIHALESQNSALKAHLRLAVD 434


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 454  GSRARYTKINLTYLKVRFGLSSIVLGSGTRSIVRICVICSFSRVLWL*AQARLPRYNP-S 278
            GSR R  K  L  LKV  GLS++V    T+      ++CSF   +       L  +NP S
Sbjct: 2357 GSRYRAVKKILDLLKVNQGLSNLV----TK------LLCSFENYV------SLAEWNPRS 2400

Query: 277  SIRSTLTSKLASVKEF*ESAA 215
             + ST  S+    K F + AA
Sbjct: 2401 KVDSTSFSRFPGYKWFLKDAA 2421


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 228 QNSLTDANLDVSVDLIDDGLYLGNL 302
           QN+LTD NL  +VD +   L   NL
Sbjct: 530 QNNLTDTNLKDAVDSLKQSLSFINL 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,519
Number of Sequences: 5004
Number of extensions: 35343
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)