Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_C17
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 31 0.50
01_03_0205 + 13777918-13778015,13778402-13778624,13779022-137791... 31 0.66
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 30 0.88
05_03_0561 - 15476484-15476649,15476814-15476893,15476971-154770... 29 1.5
02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353 29 1.5
05_01_0120 - 828834-831143 28 4.7
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 28 4.7
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 27 6.2
11_06_0286 + 21945699-21946213,21946255-21947542 27 8.2
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 31.1 bits (67), Expect = 0.50
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +3
Query: 102 IKFCNNKLRHPHFLPSKLLIFFSSIN*MARQLAEVEI---HAADSQNSLTDANLDVSVDL 272
IKFC H F F + N M E+++ H + ++DA L
Sbjct: 647 IKFCEENNFHSGF-------FDGNENNMVADAYELKVRLEHIIERIALVSDAANTERPSL 699
Query: 273 IDDGLYLGNLACAHNHKTLEKLQITHILTIDLVPLPRTILDRPNLTFKYVKF 428
+ + L++G A + TL+ L ITHIL + + ++ P+L F+Y F
Sbjct: 700 VINNLFIGGALAARSMYTLQHLGITHILCLCSNEIGQSDSQFPDL-FEYKNF 750
>01_03_0205 +
13777918-13778015,13778402-13778624,13779022-13779198,
13779277-13779437,13779520-13780519,13780923-13781069,
13781149-13781376,13781471-13781628,13781807-13782161
Length = 848
Score = 30.7 bits (66), Expect = 0.66
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +3
Query: 162 FFSSI-N*MARQLAEVEI---HAADSQNSLTDANLDVSVDLIDDGLYLGNLACAHNHKTL 329
FF I N +A E+++ H + + ++DA I D LY+G A + TL
Sbjct: 586 FFEGIDNSIAVDAYELKVRLEHILERISLISDAASTERPSQITDYLYIGGALAARSTYTL 645
Query: 330 EKLQITHILTIDLVPLPRTILDRPNLTFKYVKF 428
+ L ITH+L + + + +P+ F Y F
Sbjct: 646 KHLGITHVLCLCANEIGQAESQQPD-RFDYQNF 677
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 30.3 bits (65), Expect = 0.88
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 449 PSAIHQNKFNIFESKVWPVQYCSWEWYKVYC 357
P + NKF++FE K+ V + EW+ +C
Sbjct: 746 PFVLVLNKFDLFEEKIGRVPLSTCEWFSDFC 776
>05_03_0561 -
15476484-15476649,15476814-15476893,15476971-15477030,
15477117-15477210,15477287-15477421,15477601-15477656,
15478359-15478460,15478544-15478651,15479206-15479283,
15479432-15479521,15480061-15480123
Length = 343
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 431 NKFNIFESKVWPVQYCSWEWYKVY 360
NKF+IFE K+ V EW+K Y
Sbjct: 251 NKFDIFEKKIQKVPLSVCEWFKDY 274
>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
Length = 135
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 234 SLTDANLDVSVDLIDDGLYLGNLACAHNHKTLEKL 338
SLT ++DV +I DG L NL C +H + +L
Sbjct: 14 SLTSRSVDVDDSVISDGKRLQNLHCESSHFQMHQL 48
>05_01_0120 - 828834-831143
Length = 769
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 246 ANLDVSVDLIDDGLYLGNLACAHNHKTLEKLQITHIL 356
A D + D +YLG A A N L K ITH+L
Sbjct: 139 AFFDKECSKVADHVYLGGDAVAKNRDILRKNGITHVL 175
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +3
Query: 312 HNHKTLEKLQITHILTIDLVPLPRTILDRPNLTFKYVKFILVYRAR 449
HN++ + +++++ T+D + + +TI +R NL + + I V RAR
Sbjct: 203 HNYQVVIFIEVSNSETLDTLEMQKTISERLNLPWNEAE-ITVKRAR 247
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 277 TTDCIWVTWLVLITIKPWRSCRSHISSQ 360
T C+W++ L ++ +K WR HI+S+
Sbjct: 552 TNSCVWLSGLNVVELKKWRDL--HITSR 577
>11_06_0286 + 21945699-21946213,21946255-21947542
Length = 600
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -1
Query: 362 YCEDMCDLQLLQGFMVMSTSQVTQIQSVVN 273
Y +D+C LL ++ + +++TQ+ S +N
Sbjct: 278 YLKDICSKMLLLKYLSLKKTEITQLPSEIN 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,306
Number of Sequences: 37544
Number of extensions: 208320
Number of successful extensions: 565
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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