Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_C17
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036685-1|AAB88308.2|  369|Caenorhabditis elegans Lateral-signa...    35   0.037
Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical pr...    32   0.20 
Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical pr...    32   0.20 
AL132949-29|CAB61107.1|  209|Caenorhabditis elegans Hypothetical...    28   4.2  
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    27   5.6  

>AF036685-1|AAB88308.2|  369|Caenorhabditis elegans
           Lateral-signal-induced phosphataseprotein 1 protein.
          Length = 369

 Score = 34.7 bits (76), Expect = 0.037
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 285 LYLGNLACAHNHKTLEKLQITHILTIDLVPLPRTILDRPNLTF 413
           LYLGN   A N   L+K  I+H++ +    LP T  + PN+ +
Sbjct: 192 LYLGNAETAKNRDVLKKYSISHVINV-TSNLPNTFEEDPNMRY 233


>Z83118-1|CAB05575.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = -1

Query: 482 FFHHITREPRQPSAIHQNKFNIFESKVWPVQYCSWEWYKVYCEDMCDL-----QLLQGFM 318
           F  H+TR+P +   +H NK ++ E   W   Y    +  + C D C +     + L G  
Sbjct: 541 FLDHVTRKPNELETLHLNKVDVDEE--W--MYARERFQSLKC-DKCQVFDLGQEFLDGDR 595

Query: 317 VMSTSQVTQIQSVVNKVH 264
            ++  + T++  V N++H
Sbjct: 596 YLTFDRKTKLSYVDNQIH 613


>Z81552-6|CAB04489.1|  975|Caenorhabditis elegans Hypothetical
           protein F56G4.1 protein.
          Length = 975

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = -1

Query: 482 FFHHITREPRQPSAIHQNKFNIFESKVWPVQYCSWEWYKVYCEDMCDL-----QLLQGFM 318
           F  H+TR+P +   +H NK ++ E   W   Y    +  + C D C +     + L G  
Sbjct: 541 FLDHVTRKPNELETLHLNKVDVDEE--W--MYARERFQSLKC-DKCQVFDLGQEFLDGDR 595

Query: 317 VMSTSQVTQIQSVVNKVH 264
            ++  + T++  V N++H
Sbjct: 596 YLTFDRKTKLSYVDNQIH 613


>AL132949-29|CAB61107.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.33 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 183 MARQLAEVEIHAADSQNSLTDANLDVSVD--LIDDGLYLGNLACAHNHKTLEKLQ 341
           +A+  +EV I A DS   + +  L+ S    L+ DGL   ++    N  TLEK Q
Sbjct: 120 IAKISSEVAIPARDSYFKILNGLLEKSKSGFLVGDGLTFADIVVVENLTTLEKNQ 174


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 328  WRSCRSHISSQ*TLYHSQEQYWTGQTLLSNMLNLFW 435
            W  C     +    YH+QE+Y+  Q  +S++++  W
Sbjct: 1382 WVDCADENPANHFRYHTQEKYYDMQNTISDIMDSKW 1417


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 328  WRSCRSHISSQ*TLYHSQEQYWTGQTLLSNMLNLFW 435
            W  C     +    YH+QE+Y+  Q  +S++++  W
Sbjct: 1382 WVDCADENPANHFRYHTQEKYYDMQNTISDIMDSKW 1417


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
            protein Y16B4A.2 protein.
          Length = 2105

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 328  WRSCRSHISSQ*TLYHSQEQYWTGQTLLSNMLNLFW 435
            W  C     +    YH+QE+Y+  Q  +S++++  W
Sbjct: 1382 WVDCADENPANHFRYHTQEKYYDMQNTISDIMDSKW 1417


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,090
Number of Sequences: 27780
Number of extensions: 198641
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)